Identification and characterization of plastid-type proteins from sequence-attributed features using machine learning. - Rakesh Kaundal; Sitanshu S. Sahu; Ruchi Verma; Tyler Weirick (BMC Bioinform., 2013)

Predicting genome-scale Arabidopsis-Pseudomonas syringae interactome using domain and interolog-based approaches. - Sitanshu S. Sahu; Tyler Weirick; Rakesh Kaundal (BMC Bioinform., 2014)

LacSubPred: predicting subtypes of Laccases, an important lignin metabolism-related enzyme class, using in silico approaches. - Tyler Weirick; Sitanshu S. Sahu; Ramamurthy Mahalingam; Rakesh Kaundal (BMC Bioinform., 2014)

C-It-Loci: a knowledge database for tissue-enriched loci. - Tyler Weirick; David John; Stefanie Dimmeler; Shizuka Uchida (Bioinform., 2015)

The identification and characterization of novel transcripts from RNA-seq data. - Tyler Weirick; Giuseppe Militello; Raphael Rene Müller; David John; Stefanie Dimmeler; Shizuka Uchida (Briefings Bioinform., 2016)

RNAEditor: easy detection of RNA editing events and the introduction of editing islands. - David John; Tyler Weirick; Stefanie Dimmeler; Shizuka Uchida (Briefings Bioinform., 2017)

Screening and validation of lncRNAs and circRNAs as miRNA sponges. - Giuseppe Militello; Tyler Weirick; David John; Claudia Döring 002; Stefanie Dimmeler; Shizuka Uchida (Briefings Bioinform., 2017)

Resolving the problem of multiple accessions of the same transcript deposited across various public databases. - Tyler Weirick; David John; Shizuka Uchida (Briefings Bioinform., 2017)

Logic programming to infer complex RNA expression patterns from RNA-seq data. - Tyler Weirick; Giuseppe Militello; Yuliya Ponomareva; David John; Claudia Döring 002; Stefanie Dimmeler; Shizuka Uchida (Briefings Bioinform., 2018)

Increasing workflow development speed and reproducibility with Vectools. - Tyler Weirick; Raphael Rene Müller; Shizuka Uchida (F1000Research, 2018)

DRETools: A tool-suite for differential RNA editing detection. - Tyler Weirick; Patrick J. Trainor; Eric C. Rouchka; Andrew P. DeFilippis; Shizuka Uchida (F1000Research, 2018)