CABS-flex 2.0: a web server for fast simulations of flexibility of protein structures. - Aleksander Kuriata; Aleksandra Maria Gierut; Tymoteusz Oleniecki; Maciej Pawel Ciemny; Andrzej Kolinski; Mateusz Kurcinski; Sebastian Kmiecik (Nucleic Acids Res., 2018)

CABS-dock standalone: a toolbox for flexible protein-peptide docking. - Mateusz Kurcinski; Maciej Pawel Ciemny; Tymoteusz Oleniecki; Aleksander Kuriata; Aleksandra E. Badaczewska-Dawid; Andrzej Kolinski; Sebastian Kmiecik (Bioinform., 2019)

CABS-flex standalone: a simulation environment for fast modeling of protein flexibility. - Mateusz Kurcinski; Tymoteusz Oleniecki; Maciej Pawel Ciemny; Aleksander Kuriata; Andrzej Kolinski; Sebastian Kmiecik (Bioinform., 2019)

DAMA: a method for computing multiple alignments of protein structures using local structure descriptors. - Pawel Daniluk; Tymoteusz Oleniecki; Bogdan Lesyng (Bioinform., 2021)