Ontology Challenges for the Stem Cell Community: Towards Integrative Data Mining in the Stemformatics Atlas. - Chris Pacheco Rivera; Rowland Mosbergen; Othmar Korn; Tyrone Chen; Isha Nagpal; Christine A. Wells (ICBO, 2017)

Stemformatics: visualize and download curated stem cell data. - Jarny Choi; Chris M. Pacheco; Rowland Mosbergen; Othmar Korn; Tyrone Chen; Isha Nagpal; Steve Englart; Paul W. Angel; Christine A. Wells (Nucleic Acids Res., 2019)

A simple, scalable approach to building a cross-platform transcriptome atlas. - Paul W. Angel; Nadia Rajab; Yidi Deng; Chris M. Pacheco; Tyrone Chen; Kim-Anh Lê Cao; Jarny Choi; Christine A. Wells (PLoS Comput. Biol., 2020)

A multi-modal data harmonisation approach for discovery of COVID-19 drug targets. - Tyrone Chen; Melcy Philip; Kim-Anh Lê Cao; Sonika Tyagi (Briefings Bioinform., 2021)

multiomics: A user-friendly multi-omics data harmonisation R pipeline. - Tyrone Chen; Al J. Abadi; Kim-Anh Lê Cao; Sonika Tyagi (F1000Research, 2021)

Critique of Impure Reason: Unveiling the reasoning behaviour of medical Large Language Models. - Shamus Sim; Tyrone Chen (CoRR, 2024)