ReplicationDomain: a visualization tool and comparative database for genome-wide replication timing data. - Nodin Weddington; Alexander Stuy; Ichiro Hiratani; Tyrone Ryba; Tomoki Yokochi; David M. Gilbert (BMC Bioinform., 2008)

Replication Timing: A Fingerprint for Cell Identity and Pluripotency. - Tyrone Ryba; Ichiro Hiratani; Takayo Sasaki; Dana Battaglia; Michael Kulik; Jinfeng Zhang; Stephen Dalton; David M. Gilbert (PLoS Comput. Biol., 2011)

Topologically associating domains are stable units of replication-timing regulation Open. - Benjamin D. Pope; Tyrone Ryba; Vishnu Dileep; Feng Yue; Wei-Sheng Wu; Olgert Denas; Daniel L. Vera; Yanli Wang; R. Scott Hansen; Theresa K. Canfield; Robert E. Thurman; Yong Cheng; et al. (Nat., 2014)