Development of an intelligent electrical walking rehabilitation system. - Ren C. Luo; Tzu-Hung Hsiao (IROS, 2000)

Gene sets enrichment analysis of miRNA expression profile. - Tzu-Hung Hsiao; Hung-I Harry Chen; Patricia C. Sanchez-Diaz; Jaclyn Y. Hung; Yidong Chen 002; Yufei Huang 001 (BIBM Workshops, 2011)

S-score: A novel scoring method of gene signatures for molecular classification. - Hung-I Harry Chen; Tzu-Hung Hsiao; Yidong Chen 002; Charles Keller (GENSiPS, 2011)

Identifying genes associated with chemotherapy response in ovarian carcinomas based on DNA copy number and expression profiles. - Fang-Han Hsu; Erchin Serpedin; Tzu-Hung Hsiao; Alexander J. R. Bishop; Edward R. Dougherty; Yidong Chen 002 (GENSiPS, 2011)

Using gene sets to identify putative drugs for breast cancer. - Tzu-Hung Hsiao; Hung-I Harry Chen; Yidong Chen 002; Yu-Heng Chen; Eric Y. Chuang (BIBM, 2012)

Identification of functional genomic regions with copy number alteration in liver cancer. - Tzu-Hung Hsiao; Hung-I Harry Chen; Yidong Chen 002 (GENSiPS, 2012)

An investigation of clinical outcome prediction from integrative genomic profiles in ovarian cancer. - Lin Zhang 015; Hui Liu 024; Tzu-Hung Hsiao; Yidong Chen 002; Yufei Huang 001 (GENSiPS, 2012)

Modeling competing endogenous RNA regulatory networks in glioblastoma multiforme. - Yu-Chiao Chiu; Eric Y. Chuang; Tzu-Hung Hsiao; Yidong Chen 002 (BIBM, 2013)

Characterization of conditions for competing endogenous RNA regulation in GBM. - Yu-Chiao Chiu; Eric Y. Chuang; Tzu-Hung Hsiao; Yidong Chen 002 (GENSiPS, 2013)

Gene Regulation, Modulation, and Their Applications in Gene Expression Data Analysis. - Mario Flores; Tzu-Hung Hsiao; Yu-Chiao Chiu; Eric Y. Chuang; Yufei Huang 001; Yidong Chen 002 (Adv. Bioinformatics, 2013)

Identification of genomic functional hotspots with copy number alteration in liver cancer. - Tzu-Hung Hsiao; Hung-I Harry Chen; Stephanie Roessler; Xin Wei Wang 001; Yidong Chen 002 (EURASIP J. Bioinform. Syst. Biol., 2013)

A novel significance score for gene selection and ranking. - Yufei Xiao; Tzu-Hung Hsiao; Uthra Suresh; Hung-I Harry Chen; Xiaowu Wu; Steven E. Wolf; Yidong Chen 002 (Bioinform., 2014)

Analyzing differential regulatory networks modulated by continuous-state genomic features in glioblastoma multiforme. - Yu-Chiao Chiu; Kai-Wen Liang; Tzu-Hung Hsiao; Yidong Chen 002; Eric Y. Chuang (BIBM, 2015)

Patho-finder - A fast and accurate program for pathogen identification through RNA-seq. - Chin-Ting Wu; Tzu-Hung Hsiao; Yu-Chiao Chiu; Yu-Ching Hsu; Eric Y. Chuang; Yidong Chen 002 (BIBM, 2015)

A simple gene set-based method accurately predicts the synergy of drug pairs. - Yu-Ching Hsu; Yu-Chiao Chiu; Yidong Chen 002; Tzu-Hung Hsiao; Eric Y. Chuang (BMC Syst. Biol., 2016)

Differential correlation analysis of glioblastoma reveals immune ceRNA interactions predictive of patient survival. - Yu-Chiao Chiu; Li-Ju Wang; Tzu-Pin Lu; Tzu-Hung Hsiao; Eric Y. Chuang; Yidong Chen 002 (BMC Bioinform., 2017)

Analyzing Differential Regulatory Networks Modulated by Continuous-State Genomic Features in Glioblastoma Multiforme. - Yu-Chiao Chiu; Tzu-Hung Hsiao; Li-Ju Wang; Yidong Chen 002; Eric Y. Chuang (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

Genome-Wide Association Study (GWAS) on Metabolic Syndrome in Subjects with Abdominal Obesity in a Taiwanese Population. - Kuan-Hung Yeh; Ching-Heng Lin; Tzu-Hung Hsiao; Tzu-Pin Lu (BIBM, 2020)

Association test using Copy Number Profile Curves (CONCUR) enhances power in rare copy number variant analysis. - Amanda Brucker; Wenbin Lu; Rachel Marceau West; Qi-You Yu; Chuhsing Kate Hsiao; Tzu-Hung Hsiao; Ching-Heng Lin; Patrik K. E. Magnusson; Patrick F. Sullivan; Jin P. Szatkiewicz; Tzu-Pin Lu; Jung-Ying Tzeng (PLoS Comput. Biol., 2020)

Machine learning approaches for the genomic prediction of rheumatoid arthritis and systemic lupus erythematosus. - Chih-Wei Chung; Tzu-Hung Hsiao; Chih-Jen Huang; Yen-Ju Chen; Hsin-Hua Chen; Ching-Heng Lin; Seng-Cho Chou; Tzer-Shyong Chen; Yu-Fang Chung; Hwai-I Yang; Yi-Ming Chen (BioData Min., 2021)

Multi-ethnic Imputation System (MI-System): A genotype imputation server for high-dimensional data. - Amrita Chattopadhyay; Chien-Yueh Lee; Ying-Cheng Shen; Kuan-Chen Lu; Tzu-Hung Hsiao; Ching-Heng Lin; Liang-Chuan Lai; Mong-Hsun Tsai; Tzu-Pin Lu; Eric Y. Chuang (J. Biomed. Informatics, 2023)

Machine learning approaches to identify systemic lupus erythematosus in anti-nuclear antibody-positive patients using genomic data and electronic health records. - Chih-Wei Chung; Seng-Cho Chou; Tzu-Hung Hsiao; Grace Joyce Zhang; Yu-Fang Chung; Yi-Ming Chen (BioData Min., 2024)

Predicting drug response through tumor deconvolution by cancer cell lines. - Yu-Ching Hsu; Yu-Chiao Chiu; Tzu-Pin Lu; Tzu-Hung Hsiao; Yidong Chen 002 (Patterns, 2024)

Application of machine learning algorithm for the prediction of lupus nephritis using SNP data, polygenic risk score, and electronic health record. - Chih-Wei Chung; Seng-Cho Chou; Chung-Mao Kao; Yen-Ju Chen; Tzu-Hung Hsiao; Yi-Ming Chen (Health Informatics J., 2025)