Concurrent analysis of copy number variations and expression profiles to identify genes associated with tumorigenesis and survival outcome in lung adenocarcinoma. - Tzu-Pin Lu; Liang-Chuan Lai; Chuhsing Kate Hsiao; Pei-Chun Chen; Mong-Hsun Tsai; Eric Y. Chuang (BIBM, 2010)

Identification of reproducible gene expression signatures in lung adenocarcinoma. - Tzu-Pin Lu; Eric Y. Chuang; James J. Chen (BMC Bioinform., 2013)

Concurrent analysis of copy number variation and gene expression: application in paired non-smoking female lung cancer patients. - Pei-Chun Chen; Tzu-Pin Lu; Jung-Chih Chang; Liang-Chuan Lai; Mong-Hsun Tsai; Chuhsing Kate Hsiao; Eric Y. Chuang (Int. J. Data Min. Bioinform., 2013)

Cost-sensitive performance metric for comparing multiple ordinal classifiers. - Nysia I. George; Tzu-Pin Lu; Ching-Wei Chang (Artif. Intell. Res., 2016)

Differential correlation analysis of glioblastoma reveals immune ceRNA interactions predictive of patient survival. - Yu-Chiao Chiu; Li-Ju Wang; Tzu-Pin Lu; Tzu-Hung Hsiao; Eric Y. Chuang; Yidong Chen 002 (BMC Bioinform., 2017)

iGC - an integrated analysis package of gene expression and copy number alteration. - Yi-Pin Lai; Liang-Bo Wang; Wei-An Wang; Liang-Chuan Lai; Mong-Hsun Tsai; Tzu-Pin Lu; Eric Y. Chuang (BMC Bioinform., 2017)

CellExpress: a comprehensive microarray-based cancer cell line and clinical sample gene expression analysis online system. - Yi-Fang Lee; Chien-Yueh Lee; Liang-Chuan Lai; Mong-Hsun Tsai; Tzu-Pin Lu; Eric Y. Chuang (Database J. Biol. Databases Curation, 2018)

Probabilistic prioritization of candidate pathway association with pathway score. - Shu-Ju Lin; Tzu-Pin Lu; Qi-You Yu; Chuhsing Kate Hsiao (BMC Bioinform., 2018)

VariED: the first integrated database of gene annotation and expression profiles for variants related to human diseases. - Chien-Yueh Lee; Amrita Chattopadhyay; Li-Mei Chiang; Jyh-Ming Jimmy Juang; Liang-Chuan Lai; Mong-Hsun Tsai; Tzu-Pin Lu; Eric Y. Chuang (Database J. Biol. Databases Curation, 2019)

anamiR: integrated analysis of MicroRNA and gene expression profiling. - Ti-Tai Wang; Chien-Yueh Lee; Liang-Chuan Lai; Mong-Hsun Tsai; Tzu-Pin Lu; Eric Y. Chuang (BMC Bioinform., 2019)

Genome-Wide Association Study (GWAS) on Metabolic Syndrome in Subjects with Abdominal Obesity in a Taiwanese Population. - Kuan-Hung Yeh; Ching-Heng Lin; Tzu-Hung Hsiao; Tzu-Pin Lu (BIBM, 2020)

Association test using Copy Number Profile Curves (CONCUR) enhances power in rare copy number variant analysis. - Amanda Brucker; Wenbin Lu; Rachel Marceau West; Qi-You Yu; Chuhsing Kate Hsiao; Tzu-Hung Hsiao; Ching-Heng Lin; Patrik K. E. Magnusson; Patrick F. Sullivan; Jin P. Szatkiewicz; Tzu-Pin Lu; Jung-Ying Tzeng (PLoS Comput. Biol., 2020)

High-performance deep learning pipeline predicts individuals in mixtures of DNA using sequencing data. - Nam Nhut Phan; Amrita Chattopadhyay; Tsui-Ting Lee; Hsiang-I Yin; Tzu-Pin Lu; Liang-Chuan Lai; Hsiao-Lin Hwa; Mong-Hsun Tsai; Eric Y. Chuang (Briefings Bioinform., 2021)

CNVIntegrate: the first multi-ethnic database for identifying copy number variations associated with cancer. - Amrita Chattopadhyay; Zi Han Teoh; Chi-Yun Wu; Jyh-Ming Jimmy Juang; Liang-Chuan Lai; Mong-Hsun Tsai; Chia-Hsin Wu; Tzu-Pin Lu; Eric Y. Chuang (Database J. Biol. Databases Curation, 2021)

Gene-set integrative analysis of multi-omics data using tensor-based association test. - Sheng-Mao Chang; Meng Yang; Wenbin Lu; Yu-Jyun Huang; Yueyang Huang; Hung Hung; Jeffrey C. Miecznikowski; Tzu-Pin Lu; Jung-Ying Tzeng (Bioinform., 2021)

Transcript annotation tool (TransAT): an R package for retrieving annotations for transcript-specific genetic variants. - Ching-Yu Shih; Amrita Chattopadhyay; Chien-Hui Wu; Yu-Wen Tien; Tzu-Pin Lu (BMC Bioinform., 2021)

RNASeqR: An R Package for Automated Two-Group RNA-Seq Analysis Workflow. - Kuan-Hao Chao; Yi-Wen Hsiao; Yi-Fang Lee; Chien-Yueh Lee; Liang-Chuan Lai; Mong-Hsun Tsai; Tzu-Pin Lu; Eric Y. Chuang (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

CLIN_SKAT: an R package to conduct association analysis using functionally relevant variants. - Amrita Chattopadhyay; Ching-Yu Shih; Yu-Chen Hsu; Jyh-Ming Jimmy Juang; Eric Y. Chuang; Tzu-Pin Lu (BMC Bioinform., 2022)

ceRNAR: An R package for identification and analysis of ceRNA-miRNA triplets. - Yi-Wen Hsiao; Lin Wang 043; Tzu-Pin Lu (PLoS Comput. Biol., 2022)

Multi-ethnic Imputation System (MI-System): A genotype imputation server for high-dimensional data. - Amrita Chattopadhyay; Chien-Yueh Lee; Ying-Cheng Shen; Kuan-Chen Lu; Tzu-Hung Hsiao; Ching-Heng Lin; Liang-Chuan Lai; Mong-Hsun Tsai; Tzu-Pin Lu; Eric Y. Chuang (J. Biomed. Informatics, 2023)

Cross-population enhancement of PrediXcan predictions with a gnomAD-based east Asian reference framework. - Han-Ching Chan; Amrita Chattopadhyay; Tzu-Pin Lu (Briefings Bioinform., 2024)

Predicting drug response through tumor deconvolution by cancer cell lines. - Yu-Ching Hsu; Yu-Chiao Chiu; Tzu-Pin Lu; Tzu-Hung Hsiao; Yidong Chen 002 (Patterns, 2024)