Computational Proteomics on the Grid. - Eduardo Huedo; Ugo Bastolla; Rubén S. Montero; Ignacio Martín Llorente (New Gener. Comput., 2004)

A Framework for Protein Structure Prediction on the Grid. - Eduardo Huedo; Ugo Bastolla; Rubén S. Montero; Ignacio Martín Llorente (New Gener. Comput., 2005)

SABERTOOTH: protein structural alignment based on a vectorial structure representation. - Florian Teichert; Ugo Bastolla; Markus Porto (BMC Bioinform., 2007)

Protein Structure Alignment through a Contact Topology Profile using SABERTOOTH. - Florian Teichert; Ugo Bastolla; Markus Porto (German Conference on Bioinformatics, 2008)

Cross-Over between Discrete and Continuous Protein Structure Space: Insights into Automatic Classification and Networks of Protein Structures. - Alberto Pascual-García; David Abia; Angel R. Ortiz; Ugo Bastolla (PLoS Comput. Biol., 2009)

High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABERTOOTH. - Florian Teichert; Jonas Minning; Ugo Bastolla; Markus Porto (BMC Bioinform., 2010)

Mutation Bias Favors Protein Folding Stability in the Evolution of Small Populations. - Raul Mendez; Miriam Fritsche; Markus Porto; Ugo Bastolla (PLoS Comput. Biol., 2010)

Protein evolution along phylogenetic histories under structurally constrained substitution models. - Miguel Arenas; Helena G. Dos Santos; David Posada; Ugo Bastolla (Bioinform., 2013)

Learning structural bioinformatics and evolution with a snake puzzle. - Gonzalo S. Nido; Ludovica Bachschmid-Romano; Ugo Bastolla; Alberto Pascual-García (PeerJ Comput. Sci., 2016)

Learning protein folding and evolution with a snake puzzle. - Gonzalo S. Nido; Ludovica Bachschmid-Romano; Ugo Bastolla; Alberto Pascual-García (PeerJ Prepr., 2016)

Predicted dynamical couplings of protein residues characterize catalysis, transport and allostery. - Alvaro Alfayate; Carlos Rodriguez Caceres; Helena G. Dos Santos; Ugo Bastolla (Bioinform., 2019)

Can Conformational Changes of Proteins Be Represented in Torsion Angle Space? A Study with Rescaled Ridge Regression. - Ugo Bastolla; Yves Dehouck (J. Chem. Inf. Model., 2019)

Local Normal Mode Analysis for Fast Loop Conformational Sampling. - José Ramón López-Blanco; Yves Dehouck; Ugo Bastolla; Pablo Chacón (J. Chem. Inf. Model., 2022)

Predicting protein stability changes upon mutation using a simple orientational potential. - Iván Martín Hernández; Yves Dehouck; Ugo Bastolla; José Ramón López-Blanco; Pablo Chacón (Bioinform., 2023)

PC_ali: a tool for improved multiple alignments and evolutionary inference based on a hybrid protein sequence and structure similarity score. - Ugo Bastolla; David Abia; Oscar Piette (Bioinform., 2023)