rapmad: Robust Analysis of Peptide Microarray Data. - Bernhard Y. Renard; Martin Löwer; Yvonne Kuhne; Ulf Reimer; Andree Rothermel; Özlem Türeci; John C. Castle; Ugur Sahin (BMC Bioinform., 2011)

Pattern recognition with surface EMG signal based wavelet transformation. - Ugur Sahin; Ferat Sahin (SMC, 2012)

RNA-Seq Atlas - a reference database for gene expression profiling in normal tissue by next-generation sequencing. - Markus Krupp; Jens U. Marquardt; Ugur Sahin; Peter R. Galle; John C. Castle; Andreas Teufel (Bioinform., 2012)

Confidence-based Somatic Mutation Evaluation and Prioritization. - Martin Löwer; Bernhard Y. Renard; Jos de Graaf; Meike Wagner; Claudia Paret; Christoph Kneip; Özlem Türeci; Mustafa Diken; Cedrik M. Britten; Sebastian Kreiter; Michael Koslowski; John C. Castle; et al. (PLoS Comput. Biol., 2012)

Block Matching with Particle Swarm Optimization for Motion Estimation. - Niyazi Sorkunlu; Ugur Sahin; Ferat Sahin (SMC, 2013)

Uniform Cellular Automata Linear Rules for Edge Detection. - Selman Uguz; Ugur Sahin; Ferat Sahin (SMC, 2013)

Galaxy LIMS for next-generation sequencing. - Jelle Scholtalbers; Jasmin Rößler; Patrick Sorn; Jos de Graaf; Valesca Boisguérin; John C. Castle; Ugur Sahin (Bioinform., 2013)

TN-RSI: Trend-normalized RSI Indicator for Stock Trading Systems with Evolutionary Computation. - Ugur Sahin; A. Murat Ozbayoglu (Complex Adaptive Systems, 2014)

Salt and pepper noise filtering with fuzzy-cellular automata. - Ugur Sahin; Selman Uguz; Ferat Sahin (Comput. Electr. Eng., 2014)

Self-Replicating Patterns in 2D Linear Cellular Automata. - Selman Uguz; Ugur Sahin; Hasan Akin; Irfan Siap (Int. J. Bifurc. Chaos, 2014)

A Framework for Intelligent Creation of Edge Detection Filters. - Aaron Wilbee; Ferat Sahin; Ugur Sahin (SMC, 2015)

Edge detection with fuzzy cellular automata transition function optimized by PSO. - Selman Uguz; Ugur Sahin; Ferat Sahin (Comput. Electr. Eng., 2015)

The Transition Rules of 2D Linear Cellular Automata Over Ternary Field and Self-Replicating Patterns. - Ugur Sahin; Selman Uguz; Hasan Akin (Int. J. Bifurc. Chaos, 2015)

Secure Genome Processing in Public Cloud and HPC Environments. - André Brinkmann; Jürgen Kaiser; Martin Löwer; Lars Nagel 001; Ugur Sahin; Tim Süß (IWSG, 2017)

ArtiFuse - computational validation of fusion gene detection tools without relying on simulated reads. - Patrick Sorn; Christoph Holtsträter; Martin Löwer; Ugur Sahin; David Weber (Bioinform., 2020)

Designing a Prospective COVID-19 Therapeutic with Reinforcement Learning. - Marcin J. Skwark; Nicolás López Carranza; Thomas Pierrot; Joe Phillips; Slim Said; Alexandre Laterre; Amine Kerkeni; Ugur Sahin; Karim Beguir (CoRR, 2020)

Integrative analysis of structural variations using short-reads and linked-reads yields highly specific and sensitive predictions. - Riccha Sethi; Julia Becker; Jos de Graaf; Martin Löwer; Martin Suchan; Ugur Sahin; David Weber (PLoS Comput. Biol., 2020)

NeoFox: annotating neoantigen candidates with neoantigen features. - Franziska Lang; Pablo Riesgo-Ferreiro; Martin Löwer; Ugur Sahin; Barbara Schrörs (Bioinform., 2021)

Introducing Model Inversion Attacks on Automatic Speaker Recognition. - Karla Pizzi; Franziska Boenisch; Ugur Sahin; Konstantin Böttinger (CoRR, 2023)

Early computational detection of potential high-risk SARS-CoV-2 variants. - Karim Beguir; Marcin J. Skwark; Yunguan Fu; Thomas Pierrot; Nicolás López Carranza; Alexandre Laterre; Ibtissem Kadri; Abir Korched; Anna U. Lowegard; Bonny Gaby Lui; Bianca Sänger; Yunpeng Liu; et al. (Comput. Biol. Medicine, 2023)

Enhancing Multimodal Compositional Reasoning of Visual Language Models with Generative Negative Mining. - Ugur Sahin; Hang Li 010; Qadeer Khan; Daniel Cremers; Volker Tresp (WACV, 2024)