Constraint Programming Models for Transposition Distance Problem. - Ulisses Dias; Zanoni Dias (BSB, 2009)

An improved 1.375-approximation algorithm for the transposition distance problem. - Ulisses Dias; Zanoni Dias (BCB, 2010)

A Simulation Tool for the Study of Symmetric Inversions in Bacterial Genomes. - Ulisses Dias; Zanoni Dias; João C. Setubal (RECOMB-CG, 2010)

Using inversion signatures to generate draft genome sequence scaffolds. - Zanoni Dias; Ulisses Dias; João C. Setubal (BCB, 2011)

Sorting genomes using almost-symmetric inversions. - Zanoni Dias; Ulisses Dias; Lenwood S. Heath; João C. Setubal (SAC, 2012)

SIS: a program to generate draft genome sequence scaffolds for prokaryotes. - Zanoni Dias; Ulisses Dias; João C. Setubal (BMC Bioinform., 2012)

Genoma comparison problems. - Ulisses Dias (2012)

Heuristics for the Sorting by Length-Weighted Inversion Problem. - Thiago da Silva Arruda; Ulisses Dias; Zanoni Dias (BCB, 2013)

Greedy Randomized Search Procedure to Sort Genomes using Symmetric, Almost-Symmetric and Unitary Inversions. - Ulisses Dias; Christian Baudet; Zanoni Dias (BCB, 2013)

Heuristics for the Transposition Distance Problem. - Ulisses Dias; Zanoni Dias (J. Bioinform. Comput. Biol., 2013)

Heuristics for the Sorting by Length-Weighted Inversions Problem on Signed Permutations. - Thiago da Silva Arruda; Ulisses Dias; Zanoni Dias (AlCoB, 2014)

An improved algorithm for the sorting by reversals and transpositions problem. - Ulisses Dias; Andre Rodrigues Oliveira; Zanoni Dias (BCB, 2014)

Length and Symmetry on the Sorting by Weighted Inversions Problem. - Christian Baudet; Ulisses Dias; Zanoni Dias (BSB, 2014)

A general heuristic for genome rearrangement problems. - Ulisses Dias; Gustavo Rodrigues Galvão; Carla Negri Lintzmayer; Zanoni Dias (J. Bioinform. Comput. Biol., 2014)

Sorting by Prefix Reversals and Prefix Transpositions. - Zanoni Dias; Ulisses Dias (Discret. Appl. Math., 2015)

Sorting by weighted inversions considering length and symmetry. - Christian Baudet; Ulisses Dias; Zanoni Dias (BMC Bioinform., 2015)

On the Sorting by Reversals and Transpositions Problem. - Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (J. Univers. Comput. Sci., 2017)

Heuristics for the Sorting Signed Permutations by Reversals and Transpositions Problem. - Klairton Lima Brito; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (AlCoB, 2018)

Transfer Learning with CNN Architectures for Classifying Gastrointestinal Diseases and Anatomical Landmarks. - Danielle Dias; Ulisses Dias (MediaEval, 2018)

Flood Detection from Social Multimedia and Satellite Images Using Ensemble and Transfer Learning with CNN Architectures. - Danielle Dias; Ulisses Dias (MediaEval, 2018)

Super Short Reversals on Both Gene Order and Intergenic Sizes. - Andre Rodrigues Oliveira; Géraldine Jean; Guillaume Fertin; Ulisses Dias; Zanoni Dias (BSB, 2018)

Sorting signed circular permutations by super short operations. - Andre Rodrigues Oliveira; Guillaume Fertin; Ulisses Dias; Zanoni Dias (Algorithms Mol. Biol., 2018)

A GRASP-Based Heuristic for the Sorting by Length-Weighted Inversions Problem. - Thiago da Silva Arruda; Ulisses Dias; Zanoni Dias (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

Pixelwise Remote Sensing Image Classification Based on Recurrence Plot Deep Features. - Danielle Dias; Ulisses Dias; Nathalia Menini; Rubens A. C. Lamparelli; Guerric le Maire; Ricardo da Silva Torres (IGARSS, 2019)

Sorting by Reversals, Transpositions, and Indels on Both Gene Order and Intergenic Sizes. - Klairton Lima Brito; Géraldine Jean; Guillaume Fertin; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (ISBRA, 2019)

Block-Interchange Distance Considering Intergenic Regions. - Ulisses Dias; Andre Rodrigues Oliveira; Klairton Lima Brito; Zanoni Dias (BSB, 2019)

Super short operations on both gene order and intergenic sizes. - Andre Rodrigues Oliveira; Géraldine Jean; Guillaume Fertin; Ulisses Dias; Zanoni Dias (Algorithms Mol. Biol., 2019)

Sorting by Weighted Reversals and Transpositions. - Andre Rodrigues Oliveira; Klairton Lima Brito; Zanoni Dias; Ulisses Dias (J. Comput. Biol., 2019)

On the Complexity of Sorting by Reversals and Transpositions Problems. - Andre Rodrigues Oliveira; Klairton Lima Brito; Ulisses Dias; Zanoni Dias (J. Comput. Biol., 2019)

A 3.5-Approximation Algorithm for Sorting by Intergenic Transpositions. - Andre Rodrigues Oliveira; Géraldine Jean; Guillaume Fertin; Klairton Lima Brito; Ulisses Dias; Zanoni Dias (AlCoB, 2020)

Heuristics for Reversal Distance Between Genomes with Duplicated Genes. - Gabriel Siqueira; Klairton Lima Brito; Ulisses Dias; Zanoni Dias (AlCoB, 2020)

Sorting by Reversals and Transpositions with Proportion Restriction. - Klairton Lima Brito; Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (BSB, 2020)

Sorting by Genome Rearrangements on Both Gene Order and Intergenic Sizes. - Klairton Lima Brito; Géraldine Jean; Guillaume Fertin; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (J. Comput. Biol., 2020)

On the Complexity of Some Variations of Sorting by Transpositions. - Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (J. Univers. Comput. Sci., 2020)

Image-Based Time Series Representations for Pixelwise Eucalyptus Region Classification: A Comparative Study. - Danielle Dias; Ulisses Dias; Nathalia Menini; Rubens A. C. Lamparelli; Guerric le Maire; Ricardo da Silva Torres (IEEE Geosci. Remote. Sens. Lett., 2020)

A Multirepresentational Fusion of Time Series for Pixelwise Classification. - Danielle Dias; Allan da Silva Pinto; Ulisses Dias; Rubens A. C. Lamparelli; Guerric le Maire; Ricardo da Silva Torres (IEEE J. Sel. Top. Appl. Earth Obs. Remote. Sens., 2020)

Heuristics for the Reversal and Transposition Distance Problem. - Klairton Lima Brito; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Reversal Distance on Genomes with Different Gene Content and Intergenic Regions Information. - Alexsandro Oliveira Alexandrino; Klairton Lima Brito; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (AlCoB, 2021)

Reversals Distance Considering Flexible Intergenic Regions Sizes. - Klairton Lima Brito; Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (AlCoB, 2021)

Reversal and Transposition Distance of Genomes Considering Flexible Intergenic Regions. - Klairton Lima Brito; Andre Rodrigues Oliveira; Alexsandro Oliveira Alexandrino; Ulisses Dias; Zanoni Dias (LAGOS, 2021)

An improved approximation algorithm for the reversal and transposition distance considering gene order and intergenic sizes. - Klairton Lima Brito; Andre Rodrigues Oliveira; Alexsandro Oliveira Alexandrino; Ulisses Dias; Zanoni Dias (Algorithms Mol. Biol., 2021)

Incorporating intergenic regions into reversal and transposition distances with indels. - Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (J. Bioinform. Comput. Biol., 2021)

Reversals and transpositions distance with proportion restriction. - Klairton Lima Brito; Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (J. Bioinform. Comput. Biol., 2021)

Genome Rearrangement Distance with Reversals, Transpositions, and Indels. - Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (J. Comput. Biol., 2021)

Sorting Signed Permutations by Intergenic Reversals. - Andre Rodrigues Oliveira; Géraldine Jean; Guillaume Fertin; Klairton Lima Brito; Laurent Bulteau; Ulisses Dias; Zanoni Dias (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Sorting Permutations by Intergenic Operations. - Andre Rodrigues Oliveira; Géraldine Jean; Guillaume Fertin; Klairton Lima Brito; Ulisses Dias; Zanoni Dias (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Heuristics for Genome Rearrangement Distance With Replicated Genes. - Gabriel Siqueira; Klairton Lima Brito; Ulisses Dias; Zanoni Dias (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Transposition Distance Considering Intergenic Regions for Unbalanced Genomes. - Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Géraldine Jean; Guillaume Fertin; Ulisses Dias; Zanoni Dias (ISBRA, 2022)

A New Approach for the Reversal Distance with Indels and Moves in Intergenic Regions. - Klairton Lima Brito; Andre Rodrigues Oliveira; Alexsandro Oliveira Alexandrino; Ulisses Dias; Zanoni Dias (RECOMB-CG, 2022)

Sorting by k-Cuts on Signed Permutations. - Andre Rodrigues Oliveira; Alexsandro Oliveira Alexandrino; Géraldine Jean; Guillaume Fertin; Ulisses Dias; Zanoni Dias (RECOMB-CG, 2022)

A 1.375-Approximation Algorithm for Sorting by Transpositions with Faster Running Time. - Alexsandro Oliveira Alexandrino; Klairton Lima Brito; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (BSB, 2022)

Labeled Cycle Graph for Transposition and Indel Distance. - Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (J. Comput. Biol., 2022)

Block Interchange and Reversal Distance on Unbalanced Genomes. - Alexsandro Oliveira Alexandrino; Gabriel Siqueira; Klairton Lima Brito; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (BSB, 2023)

Approximation algorithms for sorting by k-cuts on signed permutations. - Andre Rodrigues Oliveira; Alexsandro Oliveira Alexandrino; Géraldine Jean; Guillaume Fertin; Ulisses Dias; Zanoni Dias (J. Comb. Optim., 2023)

Reversal and Indel Distance With Intergenic Region Information. - Alexsandro Oliveira Alexandrino; Klairton Lima Brito; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

Genome Rearrangement Distance With a Flexible Intergenic Regions Aspect. - Klairton Lima Brito; Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

Rearrangement distance with reversals, indels, and moves in intergenic regions on signed and unsigned permutations. - Klairton Lima Brito; Andre Rodrigues Oliveira; Alexsandro Oliveira Alexandrino; Ulisses Dias; Zanoni Dias (J. Bioinform. Comput. Biol., 2023)

Reversal and Transposition Distance on Unbalanced Genomes Using Intergenic Information. - Alexsandro Oliveira Alexandrino; Andre Rodrigues Oliveira; Géraldine Jean; Guillaume Fertin; Ulisses Dias; Zanoni Dias (J. Comput. Biol., 2023)

Maximum Alternating Balanced Cycle Decomposition and Applications in Sorting by Intergenic Operations Problems. - Klairton Lima Brito; Alexsandro Oliveira Alexandrino; Gabriel Siqueira; Andre Rodrigues Oliveira; Ulisses Dias; Zanoni Dias (RECOMB-CG, 2024)

Rearrangement Distance Problems: An updated survey. - Andre Rodrigues Oliveira; Klairton Lima Brito; Alexsandro Oliveira Alexandrino; Gabriel Siqueira; Ulisses Dias; Zanoni Dias (ACM Comput. Surv., 2024)