Interactive Molecular Dynamics Simulations on the Grid. - Rene Kobler; Thomas Köckerbauer; Ulrich Omasits; Martin Neumann 001; Wolfgang Schreiner; Jens Volkert (EUROCAST, 2007)

A critical cross-validation of high throughput structural binding prediction methods for pMHC. - Bernhard Knapp; Ulrich Omasits; Sophie Frantal; Wolfgang Schreiner (J. Comput. Aided Mol. Des., 2009)

jSimMacs for GROMACS: A Java Application for Advanced Molecular Dynamics Simulations with Remote Access Capability. - Sanjit Roopra; Bernhard Knapp; Ulrich Omasits; Wolfgang Schreiner (J. Chem. Inf. Model., 2009)

vmdICE: A plug-in for rapid evaluation of molecular dynamics simulations using VMD. - Bernhard Knapp; Nadja Lederer; Ulrich Omasits; Wolfgang Schreiner (J. Comput. Chem., 2010)

Protter: interactive protein feature visualization and integration with experimental proteomic data. - Ulrich Omasits; Christian H. Ahrens; Sebastian Müller 004; Bernd Wollscheid (Bioinform., 2014)