Comparison of methods for phylogenetic B-cell lineage inference using time-resolved antibody repertoire simulations (AbSim). - Alexander Yermanos; Victor Greiff; Nike Julia Krautler; Ulrike Menzel; Andreas Dounas; Enkelejda Miho; Annette Oxenius; Tanja Stadler; Sai T. Reddy (Bioinform., 2017)

scAmpi - A versatile pipeline for single-cell RNA-seq analysis from basics to clinics. - Anne Bertolini; Michael Prummer; Mustafa Anil Tuncel; Ulrike Menzel; María Lourdes Rosano-González; Jack Kuipers; Daniel J. Stekhoven; Tumor Profiler Consortium; Niko Beerenwinkel; Franziska Singer (PLoS Comput. Biol., 2022)