The COG database: new developments in phylogenetic classification of proteins from complete genomes. - Roman L. Tatusov; Darren A. Natale; Igor V. Garkavtsev; Tatiana A. Tatusova; Uma T. Shankavaram; Bachoti S. Rao; Boris Kiryutin; Michael Y. Galperin; Natalie D. Fedorova; Eugene V. Koonin (Nucleic Acids Res., 2001)

AbMiner: A bioinformatic resource on available monoclonal antibodies and corresponding gene identifiers for genomic, proteomic, and immunologic studies. - Sylvia M. Major; Satoshi Nishizuka; Daisaku Morita; Rick Rowland; Margot Sunshine; Uma T. Shankavaram; Frank Washburn; Daniel Asin; Hosein Kouros-Mehr; David W. Kane; John N. Weinstein (BMC Bioinform., 2006)

CellMiner: A Database Tool for the NCI-60 Cancer Cell Lines. - Uma T. Shankavaram; Sudhir Varma; David W. Kane; Margot Sunshine; Krishna Chary; William C. Reinhold; John N. Weinstein (BIOCOMP, 2008)

DiscoverSL: an R package for multi-omic data driven prediction of synthetic lethality in cancers. - Shaoli Das; Xiang Deng; Kevin Camphausen; Uma T. Shankavaram (Bioinform., 2019)