Efficient sampling algorithm for estimating subgraph concentrations and detecting network motifs. - Nadav Kashtan; Shalev Itzkovitz; Ron Milo; Uri Alon 001 (Bioinform., 2004)

Recurring Harmonic Walks and Network motifs in Western Music. - Shalev Itzkovitz; Ron Milo; Nadav Kashtan; Reuven Levitt; Amir Lahav; Uri Alon 001 (Adv. Complex Syst., 2006)

Facilitated Variation: How Evolution Learns from Past Environments To Generalize to New Environments. - Merav Parter; Nadav Kashtan; Uri Alon 001 (PLoS Comput. Biol., 2008)

Understanding hydrogen-bond patterns in proteins using network motifs. - Ofer Rahat; Uri Alon 001; Yaakov Levy; Gideon Schreiber (Bioinform., 2009)

An Analytically Solvable Model for Rapid Evolution of Modular Structure. - Nadav Kashtan; Avi E. Mayo; Tomer Kalisky; Uri Alon 001 (PLoS Comput. Biol., 2009)

Robustness in Glyoxylate Bypass Regulation. - Guy Shinar; Joshua D. Rabinowitz; Uri Alon 001 (PLoS Comput. Biol., 2009)

Invariant Distribution of Promoter Activities in Escherichia coli. - Alon Zaslaver; Shai Kaplan; Anat Bren; Adrian Jinich; Avi E. Mayo; Erez Dekel; Uri Alon 001; Shalev Itzkovitz (PLoS Comput. Biol., 2009)

Sensitivity and Robustness in Chemical Reaction Networks. - Guy Shinar; Uri Alon 001; Martin Feinberg (SIAM J. Appl. Math., 2009)

Dynamic Proteomics: a database for dynamics and localizations of endogenous fluorescently-tagged proteins in living human cells. - Milana Frenkel-Morgenstern; Ariel A. Cohen; Naama Geva-Zatorsky; Eran Eden; Jaime Prilusky; Irina Issaeva; Alex Sigal; Cellina Cohen-Saidon; Yuvalal Liron; Lydia Cohen; Tamar Danon; Natalie Perzov; et al. (Nucleic Acids Res., 2010)

Input symmetry invariance, and applications to biological systems. - Oren Shoval; Uri Alon 001; Eduardo D. Sontag (CDC/ECC, 2011)

Robust Control of PEP Formation Rate in the Carbon Fixation Pathway of C4 Plants by a Bi-functional Enzyme. - Yuval Hart; Avraham E. Mayo; Ron Milo; Uri Alon 001 (BMC Syst. Biol., 2011)

Negative auto-regulation increases the input dynamic-range of the arabinose system of Escherichia coli. - Daniel Madar; Erez Dekel; Anat Bren; Uri Alon 001 (BMC Syst. Biol., 2011)

Symmetry Invariance for Adapting Biological Systems. - Oren Shoval; Uri Alon 001; Eduardo D. Sontag (SIAM J. Appl. Dyn. Syst., 2011)

A quantitative study of creative leaps. - Lior Noy; Yuval Hart; Natalie Andrew; Omer Ramote; Avi E. Mayo; Uri Alon 001 (ICCC, 2012)

The last generation of bacterial growth in limiting nutrient. - Anat Bren; Yuval Hart; Erez Dekel; Daniel Koster; Uri Alon 001 (BMC Syst. Biol., 2013)

Promoter activity dynamics in the lag phase of Escherichia coli. - Daniel Madar; Erez Dekel; Anat Bren; Anat Zimmer; Ziv Porat; Uri Alon 001 (BMC Syst. Biol., 2013)

Evolutionary Tradeoffs between Economy and Effectiveness in Biological Homeostasis Systems. - Pablo Szekely; Hila Sheftel; Avi E. Mayo; Uri Alon 001 (PLoS Comput. Biol., 2013)

Hierarchy of non-glucose sugars in Escherichia coli. - Guy Aidelberg; Benjamin D. Towbin; Daphna Rothschild; Erez Dekel; Anat Bren; Uri Alon 001 (BMC Syst. Biol., 2014)

Logarithmic and Power Law Input-Output Relations in Sensory Systems with Fold-Change Detection. - Miri Adler; Avi E. Mayo; Uri Alon 001 (PLoS Comput. Biol., 2014)

Linear Superposition and Prediction of Bacterial Promoter Activity Dynamics in Complex Conditions. - Daphna Rothschild; Erez Dekel; Jean Hausser; Anat Bren; Guy Aidelberg; Pablo Szekely; Uri Alon 001 (PLoS Comput. Biol., 2014)

Evolutionary tradeoffs, Pareto optimality and the morphology of ammonite shells. - Avichai Tendler; Avraham E. Mayo; Uri Alon 001 (BMC Syst. Biol., 2015)

Evolution of Bow-Tie Architectures in Biology. - Tamar Friedlander; Avraham E. Mayo; Tsvi Tlusty; Uri Alon 001 (PLoS Comput. Biol., 2015)

Geometry of the Gene Expression Space of Individual Cells. - Yael Korem; Pablo Szekely; Yuval Hart; Hila Sheftel; Jean Hausser; Avi E. Mayo; Michael E. Rothenberg; Tomer Kalisky; Uri Alon 001 (PLoS Comput. Biol., 2015)

The Mass-Longevity Triangle: Pareto Optimality and the Geometry of Life-History Trait Space. - Pablo Szekely; Yael Korem; Uri Moran; Avi E. Mayo; Uri Alon 001 (PLoS Comput. Biol., 2015)

Dynamic proteomics reveals bimodal protein dynamics of cancer cells in response to HSP90 inhibitor. - Anat Zimmer; Shlomit Amar-Farkash; Tamar Danon; Uri Alon 001 (BMC Syst. Biol., 2017)

Prediction of ultra-high-order antibiotic combinations based on pairwise interactions. - Itay Katzir; Murat Cokol; Bree B. Aldridge; Uri Alon 001 (PLoS Comput. Biol., 2019)

Noise-precision tradeoff in predicting combinations of mutations and drugs. - Avichai Tendler; Anat Zimmer; Avi E. Mayo; Uri Alon 001 (PLoS Comput. Biol., 2019)

The dopamine circuit as a reward-taxis navigation system. - Omer Karin; Uri Alon 001 (PLoS Comput. Biol., 2022)

Major depressive disorder and bistability in an HPA-CNS toggle switch. - Ben Ron Mizrachi; Avichai Tendler; Omer Karin; Tomer Milo; Dafna Haran; Avi E. Mayo; Uri Alon 001 (PLoS Comput. Biol., 2023)