The immune system and other cognitive systems. - Uri Hershberg; Sol Efroni (Complex., 2001)

Useful examples and a new model of the immune system. - Uri Hershberg (Rev. d'Intelligence Artif., 2003)

Postext - A Mind for Society. - Avishalom Shalit; Tom Erez; Anna Deters; Uri Hershberg; Eran Shir; Sorin Solomon (Adaptive Agents and Multi-Agent Systems, 2005)

Detecting selection in immunoglobulin sequences. - Mohamed Uduman; Gur Yaari; Uri Hershberg; Jacob A. Stern; Mark J. Shlomchik; Steven H. Kleinstein (Nucleic Acids Res., 2011)

Reconstruction of regulatory networks through temporal enrichment profiling and its application to H1N1 influenza viral infection. - Elena Zaslavsky; German Nudelman; Susanna Marquez; Uri Hershberg; Boris M. Hartmann; Juilee Thakar; Stuart C. Sealfon; Steven H. Kleinstein (BMC Bioinform., 2013)

Efficient approximation of labeling problems with applications to immune repertoire analysis. - Yusuf Osmanlioglu; Santiago Ontañón; Uri Hershberg; Ali Shokoufandeh (ICPR, 2016)

VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements. - Inimary T. Toby; Mikhail K. Levin; Edward Salinas; Scott Christley; Sanchita Bhattacharya; Felix Breden; Adam Buntzman; Brian Corrie; John M. Fonner; Namita T. Gupta; Uri Hershberg; Nishanth Marthandan; et al. (BMC Bioinform., 2016)

Using a novel clumpiness measure to unite data with metadata: Finding common sequence patterns in immune receptor germline V genes. - Gregory W. Schwartz; Ali Shokoufandeh; Santiago Ontañón; Uri Hershberg (Pattern Recognit. Lett., 2016)

MiGHT, a multi-level Gillespie hybrid tracked modeling framework which allows for cellular and environmental adaptivity. - Justin Melunis; Uri Hershberg (SSCI, 2017)

ImmuneDB: a system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data. - Aaron M. Rosenfeld; Wenzhao Meng; Eline T. Luning Prak; Uri Hershberg (Bioinform., 2017)

Detection of network communities with memory-biased random walk algorithms. - Mesut Yucel; Lev Muchnik; Uri Hershberg (J. Complex Networks, 2017)

A spatially heterogeneous Gillespie algorithm modeling framework that enables individual molecule history and tracking. - Justin Melunis; Uri Hershberg (Eng. Appl. Artif. Intell., 2017)