MODBASE, a database of annotated comparative protein structure models. - Roberto Sánchez; Ursula Pieper 001; Nebojsa Mirkovic; Paul I. W. de Bakker; Edward Wittenstein; Andrej Sali (Nucleic Acids Res., 2000)

MODBASE, a database of annotated comparative protein structure models. - Ursula Pieper 001; Narayanan Eswar; Ashley C. Stuart; Valentin A. Ilyin; Andrej Sali (Nucleic Acids Res., 2002)

ModView, visualization of multiple protein sequences and structures. - Valentin A. Ilyin; Ursula Pieper 001; Ashley C. Stuart; Marc A. Martí-Renom; Linda McMahan; Andrej Sali (Bioinform., 2003)

Tools for comparative protein structure modeling and analysis. - Narayanan Eswar; Bino John; Nebojsa Mirkovic; András Fiser; Valentin A. Ilyin; Ursula Pieper 001; Ashley C. Stuart; Marc A. Martí-Renom; Mallur S. Madhusudhan; Bozidar Yerkovich; Andrej Sali (Nucleic Acids Res., 2003)

MODBASE, a database of annotated comparative protein structure models, and associated resources. - Ursula Pieper 001; Narayanan Eswar; Hannes Braberg; Mallur S. Madhusudhan; Fred P. Davis; Ashley C. Stuart; Nebojsa Mirkovic; Andrea Rossi 005; Marc A. Martí-Renom; András Fiser; Ben M. Webb; Daniel M. Greenblatt; et al. (Nucleic Acids Res., 2004)

LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources. - Rachel Karchin; Mark Diekhans; Libusha Kelly; Daryl J. Thomas; Ursula Pieper 001; Narayanan Eswar; David Haussler; Andrej Sali (Bioinform., 2005)

MODBASE: a database of annotated comparative protein structure models and associated resources. - Ursula Pieper 001; Narayanan Eswar; Fred P. Davis; Hannes Braberg; Mallur S. Madhusudhan; Andrea Rossi 005; Marc A. Martí-Renom; Rachel Karchin; Ben M. Webb; David Eramian; Min-Yi Shen; Libusha Kelly; et al. (Nucleic Acids Res., 2006)

The AnnoLite and AnnoLyze programs for comparative annotation of protein structures. - Marc A. Martí-Renom; Andrea Rossi 005; Fátima Al-Shahrour; Fred P. Davis; Ursula Pieper 001; Joaquín Dopazo; Andrej Sali (BMC Bioinform., 2007)

DBAli tools: mining the protein structure space. - Marc A. Martí-Renom; Ursula Pieper 001; Mallur S. Madhusudhan; Andrea Rossi 005; Narayanan Eswar; Fred P. Davis; Fátima Al-Shahrour; Joaquín Dopazo; Andrej Sali (Nucleic Acids Res., 2007)

MODBASE, a database of annotated comparative protein structure models and associated resources. - Ursula Pieper 001; Narayanan Eswar; Ben M. Webb; David Eramian; Libusha Kelly; David T. Barkan; Hannah Carter; Parminder Mankoo; Rachel Karchin; Marc A. Martí-Renom; Fred P. Davis; Andrej Sali (Nucleic Acids Res., 2009)

Prediction of protease substrates using sequence and structure features. - David T. Barkan; Daniel R. Hostetter; Sami Mahrus; Ursula Pieper 001; James A. Wells; Charles S. Craik; Andrej Sali (Bioinform., 2010)

ModBase, a database of annotated comparative protein structure models, and associated resources. - Ursula Pieper 001; Benjamin M. Webb; David T. Barkan; Dina Schneidman-Duhovny; Avner Schlessinger; Hannes Braberg; Zheng Yang; Elaine C. Meng; Eric F. Pettersen; Conrad C. Huang; Ruchira S. Datta; Parthasarathy Sampathkumar; et al. (Nucleic Acids Res., 2011)

SALIGN: a web server for alignment of multiple protein sequences and structures. - Hannes Braberg; Benjamin M. Webb; Elina Tjioe; Ursula Pieper 001; Andrej Sali; Mallur S. Madhusudhan (Bioinform., 2012)

Target Prediction for an Open Access Set of Compounds Active against Mycobacterium tuberculosis. - Francisco Martínez-Jiménez; George Papadatos; Lun Yang; Iain M. Wallace; Vinod Kumar; Ursula Pieper 001; Andrej Sali; James R. Brown; John P. Overington; Marc A. Martí-Renom (PLoS Comput. Biol., 2013)

ModBase, a database of annotated comparative protein structure models and associated resources. - Ursula Pieper 001; Benjamin M. Webb; Guang Qiang Dong; Dina Schneidman-Duhovny; Hao Fan 002; Seung Joong Kim; Natalia Khuri; Yannick G. Spill; Patrick Weinkam; Michal Hammel; John A. Tainer; Michael Nilges; et al. (Nucleic Acids Res., 2014)

Prediction of Functionally Important Phospho-Regulatory Events in Xenopus laevis Oocytes. - Jeffrey R. Johnson; Silvia D. Santos; Tasha Johnson; Ursula Pieper 001; Marta Strumillo; Omar Wagih; Andrej Sali; Nevan J. Krogan; Pedro Beltrão (PLoS Comput. Biol., 2015)