Ursula Pieper

According to our database, Ursula Pieper authored at least 16 papers between 2000 and 2015.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2015

Prediction of Functionally Important Phospho-Regulatory Events in <i>Xenopus laevis</i> Oocytes.

Jeffrey R. Johnson, Silvia D. Santos, Tasha Johnson, Ursula Pieper, Marta Strumillo, Omar Wagih, Andrej Sali, Nevan J. Krogan, Pedro Beltrão

PLoS Comput. Biol., 2015

2014

ModBase, a database of annotated comparative protein structure models and associated resources.

Ursula Pieper, Benjamin M. Webb, Guang Qiang Dong, Dina Schneidman-Duhovny, Hao Fan, Seung Joong Kim, Natalia Khuri, Yannick G. Spill, Patrick Weinkam, Michal Hammel, John A. Tainer, Michael Nilges, Andrej Sali

Nucleic Acids Res., 2014

2013

Target Prediction for an Open Access Set of Compounds Active against <i>Mycobacterium tuberculosis</i>.

Francisco Martínez-Jiménez, George Papadatos, Lun Yang, Iain M. Wallace, Vinod Kumar, Ursula Pieper, Andrej Sali, James R. Brown, John P. Overington, Marc A. Martí-Renom

PLoS Comput. Biol., 2013

2012

SALIGN: a web server for alignment of multiple protein sequences and structures.

Hannes Braberg, Benjamin M. Webb, Elina Tjioe, Ursula Pieper, Andrej Sali, Mallur S. Madhusudhan

Bioinform., 2012

2011

ModBase, a database of annotated comparative protein structure models, and associated resources.

Ursula Pieper, Benjamin M. Webb, David T. Barkan, Dina Schneidman-Duhovny, Avner Schlessinger, Hannes Braberg, Zheng Yang, Elaine C. Meng, Eric F. Pettersen, Conrad C. Huang, Ruchira S. Datta, Parthasarathy Sampathkumar, Mallur S. Madhusudhan, Kimmen Sjölander, Thomas E. Ferrin, Stephen K. Burley, Andrej Sali

Nucleic Acids Res., 2011

2010

Prediction of protease substrates using sequence and structure features.

David T. Barkan, Daniel R. Hostetter, Sami Mahrus, Ursula Pieper, James A. Wells, Charles S. Craik, Andrej Sali

Bioinform., 2010

2009

MODBASE, a database of annotated comparative protein structure models and associated resources.

Ursula Pieper, Narayanan Eswar, Ben M. Webb, David Eramian, Libusha Kelly, David T. Barkan, Hannah Carter, Parminder Mankoo, Rachel Karchin, Marc A. Martí-Renom, Fred P. Davis, Andrej Sali

Nucleic Acids Res., 2009

2007

DBAli tools: mining the protein structure space.

Marc A. Martí-Renom, Ursula Pieper, Mallur S. Madhusudhan, Andrea Rossi, Narayanan Eswar, Fred P. Davis, Fátima Al-Shahrour, Joaquín Dopazo, Andrej Sali

Nucleic Acids Res., 2007

The AnnoLite and AnnoLyze programs for comparative annotation of protein structures.

Marc A. Martí-Renom, Andrea Rossi, Fátima Al-Shahrour, Fred P. Davis, Ursula Pieper, Joaquín Dopazo, Andrej Sali

BMC Bioinform., 2007

2006

MODBASE: a database of annotated comparative protein structure models and associated resources.

Ursula Pieper, Narayanan Eswar, Fred P. Davis, Hannes Braberg, Mallur S. Madhusudhan, Andrea Rossi, Marc A. Martí-Renom, Rachel Karchin, Ben M. Webb, David Eramian, Min-Yi Shen, Libusha Kelly, Francisco Melo, Andrej Sali

Nucleic Acids Res., 2006

2005

LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources.

Rachel Karchin, Mark Diekhans, Libusha Kelly, Daryl J. Thomas, Ursula Pieper, Narayanan Eswar, David Haussler, Andrej Sali

Bioinform., 2005

2004

MODBASE, a database of annotated comparative protein structure models, and associated resources.

Ursula Pieper, Narayanan Eswar, Hannes Braberg, Mallur S. Madhusudhan, Fred P. Davis, Ashley C. Stuart, Nebojsa Mirkovic, Andrea Rossi, Marc A. Martí-Renom, András Fiser, Ben M. Webb, Daniel M. Greenblatt, Conrad C. Huang, Thomas E. Ferrin, Andrej Sali

Nucleic Acids Res., 2004

2003

Tools for comparative protein structure modeling and analysis.

Narayanan Eswar, Bino John, Nebojsa Mirkovic, András Fiser, Valentin A. Ilyin, Ursula Pieper, Ashley C. Stuart, Marc A. Martí-Renom, Mallur S. Madhusudhan, Bozidar Yerkovich, Andrej Sali

Nucleic Acids Res., 2003

ModView, visualization of multiple protein sequences and structures.

Valentin A. Ilyin, Ursula Pieper, Ashley C. Stuart, Marc A. Martí-Renom, Linda McMahan, Andrej Sali

Bioinform., 2003

2002

MODBASE, a database of annotated comparative protein structure models.

Ursula Pieper, Narayanan Eswar, Ashley C. Stuart, Valentin A. Ilyin, Andrej Sali

Nucleic Acids Res., 2002

2000

MODBASE, a database of annotated comparative protein structure models.

Roberto Sánchez, Ursula Pieper, Nebojsa Mirkovic, Paul I. W. de Bakker, Edward Wittenstein, Andrej Sali

Nucleic Acids Res., 2000