DeDaL: Cytoscape 3 app for producing and morphing data-driven and structure-driven network layouts. - Urszula Czerwinska; Laurence Calzone; Emmanuel Barillot; Andrei Yu. Zinovyev (BMC Syst. Biol., 2015)

Reconstruction and signal propagation analysis of the Syk signaling network in breast cancer cells. - Aurélien Naldi; Romain M. Larive; Urszula Czerwinska; Serge Urbach; Philippe Montcourrier; Christian Roy; Jérôme Solassol; Gilles Freiss; Peter J. Coopman; Ovidiu Radulescu (PLoS Comput. Biol., 2017)

Application of Independent Component Analysis to Tumor Transcriptomes Reveals Specific and Reproducible Immune-Related Signals. - Urszula Czerwinska; Laura Cantini; Ulykbek Kairov; Emmanuel Barillot; Andrei Yu. Zinovyev (LVA/ICA, 2018)

Collective intelligence defines biological functions in Wikipedia as communities in the hidden protein connection network. - Andrei Yu. Zinovyev; Urszula Czerwinska; Laura Cantini; Emmanuel Barillot; Klaus M. Frahm; Dima L. Shepelyansky (PLoS Comput. Biol., 2020)

Complex Labelling and Similarity Prediction in Legal Texts: Automatic Analysis of France's Court of Cassation Rulings. - Thibault Charmet; Inès Cherichi; Matthieu Allain; Urszula Czerwinska; Amaury Fouret; Benoît Sagot; Rachel Bawden (LREC, 2022)

Benchmarking Image Embeddings for E-Commerce: Evaluating Off-the Shelf Foundation Models, Fine-Tuning Strategies and Practical Trade-offs. - Urszula Czerwinska; Cenk Bircanoglu; Jeremy Chamoux (CoRR, 2025)