Exploring HCV genome to construct multi-epitope based subunit vaccine to battle HCV infection: Immunoinformatics based approach. - Hina Khalid; Usman Ali Ashfaq (J. Biomed. Informatics, 2020)

Designing multi-epitope vaccine against Staphylococcus aureus by employing subtractive proteomics, reverse vaccinology and immuno-informatics approaches. - Muhammad Tahir Ul Qamar; Sajjad Ahmad; Israr Fatima; Faisal Ahmad; Farah Shahid; Anam Naz; Sumra Wajid Abbasi; Abbas Khan; Muhammad Usman Mirza; Usman Ali Ashfaq; Ling-Ling Chen (Comput. Biol. Medicine, 2021)

Designing of a multi-epitopes-based peptide vaccine against rift valley fever virus and its validation through integrated computational approaches. - Israr Fatima; Sajjad Ahmad; Sumra Wajid Abbasi; Usman Ali Ashfaq; Farah Shahid; Muhammad Tahir Ul Qamar; Abdur Rehman; Khaled S. Allemailem (Comput. Biol. Medicine, 2022)

Machine learning for synergistic network pharmacology: a comprehensive overview. - Fatima Noor; Muhammad Asif; Usman Ali Ashfaq; Muhammad Qasim; Muhammad Tahir Ul Qamar (Briefings Bioinform., 2023)

Advanced network pharmacology study reveals multi-pathway and multi-gene regulatory molecular mechanism of Bacopa monnieri in liver cancer based on data mining, molecular modeling, and microarray data analysis. - Muhammad Sadaqat; Muhammad Qasim; Muhammad Tahir Ul Qamar; Muhammad Shareef Masoud; Usman Ali Ashfaq; Fatima Noor; Kinza Fatima; Khaled S. Allemailem; Faris Alrumaihi; Ahmad Almatroudi (Comput. Biol. Medicine, 2023)

Artificial intelligence in cancer diagnosis and therapy: Current status and future perspective. - Muhammad Sufyan; Zeeshan Shokat; Usman Ali Ashfaq (Comput. Biol. Medicine, 2023)

Integrating in vitro, network pharmacology, and molecular docking approaches to uncover the antidiabetic potential of Tylophora hirsuta. - Fazal Hadi; Fatima Noor; Haseeba Sardar; Hany W. Darwish; Usman Ali Ashfaq; Ashraf Ali Khan; Maria Daglia; Haroon Khan (Comput. Biol. Chem., 2025)