FiatFlux - a software for metabolic flux analysis from 13C-glucose experiments. - Nicola Zamboni; Eliane Fischer; Uwe Sauer (BMC Bioinform., 2005)

Efficient classification of complete parameter regions based on semidefinite programming. - Lars Kuepfer; Uwe Sauer; Pablo A. Parrilo (BMC Bioinform., 2007)

Transcriptional regulation of respiration in yeast metabolizing differently repressive carbon substrates. - Sarah-Maria Fendt; Uwe Sauer (BMC Syst. Biol., 2010)

Topological augmentation to infer hidden processes in biological systems. - Mikael Sunnåker; Elías Zamora-Sillero; Adrián López García de Lomana; Florian Rudroff; Uwe Sauer; Jörg Stelling; Andreas Wagner (Bioinform., 2014)

Model-based media selection to minimize the cost of metabolic cooperation in microbial ecosystems. - Mattia Zampieri; Uwe Sauer (Bioinform., 2016)

Untargeted metabolomics unravels functionalities of phosphorylation sites in Saccharomyces cerevisiae. - Zrinka Raguz Nakic; Gerhard Seisenbacher; Francesc Posas; Uwe Sauer (BMC Syst. Biol., 2016)

Elucidation of Genetic Interactions in the Yeast GATA-Factor Network Using Bayesian Model Selection. - Andreas Milias-Argeitis; Ana Paula Oliveira; Luca Gerosa; Laura Falter; Uwe Sauer; John Lygeros (PLoS Comput. Biol., 2016)

Systematic Analysis of Transcriptional and Post-transcriptional Regulation of Metabolism in Yeast. - Emanuel J. V. Gonçalves; Zrinka Raguz Nakic; Mattia Zampieri; Omar Wagih; David Ochoa; Uwe Sauer; Pedro Beltrão; Julio Saez-Rodriguez (PLoS Comput. Biol., 2017)