Coexpressionfinder: a New Algorithm for Finding Groups of Coexpressed Genes. - Sergey I. Rogov; Kuvat T. Momynaliev; Vadim M. Govorun (J. Bioinform. Comput. Biol., 2006)

Bacterial rose garden for metagenomic SNP-based phylogeny visualization. - Dmitry G. Alexeev; Tanya Bibikova; Boris Kovarsky; Damir Melnikov; Alexander V. Tyakht; Vadim Govorun (BioData Min., 2015)

Large scale analysis of amino acid substitutions in bacterial proteomics. - Dmitry S. Ischenko; Dmitry G. Alexeev; Egor Shitikov; Alexandra Kanygina; Maja Malakhova; Elena S. Kostryukova; Andrey Larin; Sergey Kovalchuk; Olga Pobeguts; Ivan Butenko; Nikolay A. Kolchanov; Ilya A. Altukhov; et al. (BMC Bioinform., 2016)

Phigaro: high-throughput prophage sequence annotation. - Elizaveta V. Starikova; Polina O. Tikhonova; Nikita A. Prianichnikov; Chris M. Rands; Evgeny M. Zdobnov; Elena N. Ilina; Vadim M. Govorun (Bioinform., 2020)

Snapper: high-sensitive detection of methylation motifs based on Oxford Nanopore reads. - Dmitry Konanov; Vladislav V. Babenko; Aleksandra M. Belova; Arina G. Madan; Daria I Boldyreva; Oksana E. Glushenko; Ivan Butenko; Dmitry E. Fedorov; Alexander I Manolov; Danil V. Krivonos; Vassili N. Lazarev; Vadim M. Govorun; et al. (Bioinform., 2023)

BAC-browser: the tool for synthetic biology. - Tatiana A. Semashko; Gleb Y. Fisunov; Georgiy Y. Shevelev; Vadim M. Govorun (BMC Bioinform., 2025)