Genome Detective: an automated system for virus identification from high-throughput sequencing data. - Michael Vilsker; Yumna Moosa; Sam Nooij; Vagner Fonseca; Yoika Ghysens; Korneel Dumon; Raf Pauwels; Luiz Carlos Alcantara; Ewout Vanden Eynden; Anne-Mieke Vandamme; Koen Deforche; Tulio de Oliveira (Bioinform., 2019)

Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes. - Sara Cleemput; Wim Dumon; Vagner Fonseca; Wasim Abdool Karim; Marta Giovanetti; Luiz Carlos Alcantara; Koen Deforche; Tulio de Oliveira (Bioinform., 2020)

Development of bioinformatics tools for assembly and genomic characterization of emerging and reemerging viruses circulating in Brazil - Vagner Fonseca (2022)