MMDB: Entrez's 3D-structure database. - Jie Chen 039; John B. Anderson; Carol DeWeese-Scott; Natalie D. Fedorova; Lewis Y. Geer; Siqian He; David I. Hurwitz; John D. Jackson; Aviva R. Jacobs; Christopher J. Lanczycki; Cynthia A. Liebert; Chunlei Liu 002; et al. (Nucleic Acids Res., 2003)

CDD: a curated Entrez database of conserved domain alignments. - Aron Marchler-Bauer; John B. Anderson; Carol DeWeese-Scott; Natalie D. Fedorova; Lewis Y. Geer; Siqian He; David I. Hurwitz; John D. Jackson; Aviva R. Jacobs; Christopher J. Lanczycki; Cynthia A. Liebert; Chunlei Liu 002; et al. (Nucleic Acids Res., 2003)

CDD: a Conserved Domain Database for protein classification. - Aron Marchler-Bauer; John B. Anderson; Praveen F. Cherukuri; Carol DeWeese-Scott; Lewis Y. Geer; Marc Gwadz; Siqian He; David I. Hurwitz; John D. Jackson; Zhaoxi Ke; Christopher J. Lanczycki; Cynthia A. Liebert; et al. (Nucleic Acids Res., 2005)

PubChem3D: a new resource for scientists. - Evan Bolton; Jie Chen 039; Sunghwan Kim 002; Lianyi Han; Siqian He; Wenyao Shi; Vahan Simonyan; Yan Sun; Paul A. Thiessen; Jiyao Wang; Bo Yu 016; Jian Zhang 038; et al. (J. Cheminformatics, 2011)

SNVDis: A Proteome-wide Analysis Service for Evaluating nsSNVs in Protein Functional Sites and Pathways. - Konstantinos Karagiannis; Vahan Simonyan; Raja Mazumder (Genom. Proteom. Bioinform., 2013)

Structure-based Comparative Analysis and Prediction of N-linked Glycosylation Sites in Evolutionarily Distant Eukaryotes. - Phuc Vinh Nguyen Lam; Radoslav Goldman; Konstantinos Karagiannis; Tejas Narsule; Vahan Simonyan; Valerii Soika; Raja Mazumder (Genom. Proteom. Bioinform., 2013)

A framework for organizing cancer-related variations from existing databases, publications and NGS data using a High-performance Integrated Virtual Environment (HIVE). - Tsung-Jung Wu; Amirhossein Shamsaddini; Yang Pan; Krista Smith; Daniel J. Crichton; Vahan Simonyan; Raja Mazumder (Database J. Biol. Databases Curation, 2014)

Non-synonymous variations in cancer and their effects on the human proteome: workflow for NGS data biocuration and proteome-wide analysis of TCGA data. - Charles Cole 002; Konstantinos Krampis; Konstantinos Karagiannis; Jonas S. Almeida; William J. Faison; Mona Motwani; Quan Wan; Anton Golikov; Yang Pan; Vahan Simonyan; Raja Mazumder (BMC Bioinform., 2014)

Advantages of distributed and parallel algorithms that leverage Cloud Computing platforms for large-scale genome assembly. - Priti Kumari 005; Raja Mazumder; Vahan Simonyan; Konstantinos Krampis (F1000Research, 2015)

High-performance integrated virtual environment (HIVE): a robust infrastructure for next-generation sequence data analysis. - Vahan Simonyan; Konstantin Chumakov; Hayley Dingerdissen; William J. Faison; Scott Goldweber; Anton Golikov; Naila Gulzar; Konstantinos Karagiannis; Phuc Vinh Nguyen Lam; Thomas Maudru; Olesja Muravitskaja; Ekaterina Osipova; et al. (Database J. Biol. Databases Curation, 2016)

A new and updated resource for codon usage tables. - John Athey; Aikaterini Alexaki; Ekaterina Osipova; Alexandre Rostovtsev; Luis V. Santana-Quintero; Upendra Katneni; Vahan Simonyan; Chava Kimchi-Sarfaty (BMC Bioinform., 2017)

Pubcast and Genecast: Browsing and Exploring Publications and Associated Curated Content in Biology Through Mobile Devices. - Scott Goldweber; Jamal Theodore; John Torcivia-Rodriguez; Vahan Simonyan; Raja Mazumder (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)

Building the foundation for a modern patient-partnered infrastructure to study temporomandibular disorders. - Laura Elisabeth Gressler; Terrie Cowley; Marti Velezis; Suvekshya Aryal; Deanne Clare; John W. Kusiak; Allen W. Cowley; Art Sedrakyan; Danica Marinac-Dabic; Michelle Reardon; Lisa Schmidt; Jennifer Ginsburg Feldman; et al. (Frontiers Digit. Health, 2023)