Scalable Rule-Based Modelling of Allosteric Proteins and Biochemical Networks. - Julien F. Ollivier; Vahid Shahrezaei; Peter S. Swain (PLoS Comput. Biol., 2010)

Bell-shaped and ultrasensitive dose-response in phosphorylation-dephosphorylation cycles: the role of kinase-phosphatase complex formation. - Barbara Szomolay; Vahid Shahrezaei (BMC Syst. Biol., 2012)

Integrating multi-OMICS data through sparse canonical correlation analysis for the prediction of complex traits: a comparison study. - Theodoulos Rodosthenous; Vahid Shahrezaei; Marina Evangelou (Bioinform., 2020)

bayNorm: Bayesian gene expression recovery, imputation and normalization for single-cell RNA-sequencing data. - Wenhao Tang; François Bertaux; Philipp Thomas; Claire Stefanelli; Malika Saint; Samuel Marguerat; Vahid Shahrezaei (Bioinform., 2020)

A bacterial size law revealed by a coarse-grained model of cell physiology. - François Bertaux; Julius von Kügelgen; Samuel Marguerat; Vahid Shahrezaei (PLoS Comput. Biol., 2020)

Multi-view Data Visualisation via Manifold Learning. - Theodoulos Rodosthenous; Vahid Shahrezaei; Marina Evangelou (CoRR, 2021)

S-multi-SNE: Semi-Supervised Classification and Visualisation of Multi-View Data. - Theodoulos Rodosthenous; Vahid Shahrezaei; Marina Evangelou (CoRR, 2021)

Benchmarking imputation methods for network inference using a novel method of synthetic scRNA-seq data generation. - Ayoub Lasri; Vahid Shahrezaei; Marc Sturrock (BMC Bioinform., 2022)

Efficient Bayesian inference for stochastic agent-based models. - Andreas Christ Sølvsten Jørgensen; Atiyo Ghosh; Marc Sturrock; Vahid Shahrezaei (PLoS Comput. Biol., 2022)

Multi-view data visualisation via manifold learning. - Theodoulos Rodosthenous; Vahid Shahrezaei; Marina Evangelou (PeerJ Comput. Sci., 2024)