CNN-PepPred: an open-source tool to create convolutional NN models for the discovery of patterns in peptide sets - application to peptide-MHC class II binding prediction. - Valentin Junet; Xavier Daura (Bioinform., 2021)

CuBlock: a cross-platform normalization method for gene-expression microarrays. - Valentin Junet; Judith Farrés; José M. Mas; Xavier Daura (Bioinform., 2021)

IgIDivA: immunoglobulin intraclonal diversification analysis. - Laura Zaragoza-Infante; Valentin Junet; Nikos Pechlivanis; Styliani-Christina Fragkouli; Serovpe Amprachamian; Triantafyllia Koletsa; Anastasia Chatzidimitriou; Maria Papaioannou; Kostas Stamatopoulos; Andreas Agathangelidis; Fotis E. Psomopoulos (Briefings Bioinform., 2022)

Machine Learning techniques in bioinformatics: From data integration to the development of application-oriented tools - Valentin Junet (2023)