Variation of spectral, structural, and vibrational properties within the intrinsically fluorescent proteins family: A density functional study. - Riccardo Nifosí; Pietro Amat; Valentina Tozzini (J. Comput. Chem., 2007)

Coarse-grained force field for the nucleosome from self-consistent multiscaling. - Karine Voltz; Joanna Trylska; Valentina Tozzini; Vandana Kurkal-Siebert; Jörg Langowski; Jeremy C. Smith (J. Comput. Chem., 2008)

SDPhound, a Mutual Information-Based Method to Investigate Specificity-Determining Positions. - Sara Bonella; Walter Rocchia; Pietro Amat; Riccardo Nifosí; Valentina Tozzini (Algorithms, 2009)

Genetic Algorithm Optimization of Force Field Parameters: Application to a Coarse-Grained Model of RNA. - Filip Leonarski; Fabio Trovato; Valentina Tozzini; Joanna Trylska (EvoBio, 2011)

SecStAnT: secondary structure analysis tool for data selection, statistics and models building. - Giuseppe Maccari; Giulia L. B. Spampinato; Valentina Tozzini (Bioinform., 2014)

Evolutionary Switches Structural Transitions via Coarse-Grained Models. - Francesco Delfino; Yuri Porozov; Eugene Stepanov; Gaik Tamazian; Valentina Tozzini (J. Comput. Biol., 2020)