Conformational search using a molecular dynamics-minimization procedure: Applications to clusters of coulombic charges, Lennard-Jones particles, and waters. - Zhenqin Li; Keith E. Laidig; Valerie Daggett (J. Comput. Chem., 1998)

Generation of a consensus protein domain dictionary. - R. Dustin Schaeffer; Amanda L. Jonsson; Andrew M. Simms; Valerie Daggett (Bioinform., 2011)

Implementation of 3D spatial indexing and compression in a large-scale molecular dynamics simulation database for rapid atomic contact detection. - Rudesh D. Toofanny; Andrew M. Simms; David A. C. Beck; Valerie Daggett (BMC Bioinform., 2011)

Wavelet Analysis of protein Motion. - Noah C. Benson; Valerie Daggett (Int. J. Wavelets Multiresolution Inf. Process., 2012)

A Chemical Group Graph Representation for Efficient High-Throughput Analysis of atomistic protein Simulations. - Noah C. Benson; Valerie Daggett (J. Bioinform. Comput. Biol., 2012)

Protein simulation data in the relational model. - Andrew M. Simms; Valerie Daggett (J. Supercomput., 2012)

DIVE: a data intensive visualization engine. - Dennis Bromley; Steven J. Rysavy; Robert Su; Rudesh D. Toofanny; Tom Schmidlin; Valerie Daggett (Bioinform., 2014)

DIVE: A Graph-Based Visual-Analytics Framework for Big Data. - Steven J. Rysavy; Dennis Bromley; Valerie Daggett (IEEE Computer Graphics and Applications, 2014)