A Novel Bioinformatics Technique for Predicting Condition-specific Transcription Factor Binding Sites. - Valmik Desai; Purvesh Khatri; Arina Done; Aviva Friedman; Michael A. Tainsky; Sorin Draghici (CIBCB, 2005)

New Onto-Tools: Promoter-Express, nsSNPCounter and Onto-Translate. - Purvesh Khatri; Valmik Desai; Adi L. Tarca; Sivakumar Sellamuthu; Derek E. Wildman; Roberto Romero; Sorin Draghici (Nucleic Acids Res., 2006)

The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation. - Chenggang Yu; Nela Zavaljevski; Valmik Desai; Seth Johnson; Fred J. Stevens; Jaques Reifman (BMC Bioinform., 2008)

Accelerating Biomedical Research in Designing Diagnostic Assays, Drugs, and Vaccines. - Anders Wallqvist; Nela Zavaljevski; Ravi Vijaya Satya; Rajkumar Bondugula; Valmik Desai; Xin Hu; Kamal Kumar 002; Michael S. Lee; In-Chul Yeh; Chenggang Yu; Jaques Reifman (Comput. Sci. Eng., 2010)

QuartetS-DB: a large-scale orthology database for prokaryotes and eukaryotes inferred by evolutionary evidence. - Chenggang Yu; Valmik Desai; Li Cheng; Jaques Reifman (BMC Bioinform., 2012)