Building an Application Framework for Integrative Genomics. - Heta N. Ray; Vamsi K. Mootha; Aziz A. Boxwala (AMIA, 2003)

MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins. - Sarah E. Calvo; Karl R. Clauser; Vamsi K. Mootha (Nucleic Acids Res., 2016)

CLIC, a tool for expanding biological pathways based on co-expression across thousands of datasets. - Yang Li; Alexis A. Jourdain; Sarah E. Calvo; Jun S. Liu; Vamsi K. Mootha (PLoS Comput. Biol., 2017)

MitoCarta3.0: an updated mitochondrial proteome now with sub-organelle localization and pathway annotations. - Sneha Rath; Rohit Sharma; Rahul Gupta; Tslil Ast; Connie Chan; Timothy J. Durham; Russell P. Goodman; Zenon Grabarek; Mary E. Haas; Wendy H. W. Hung; Pallavi R. Joshi; Alexis A. Jourdain; et al. (Nucleic Acids Res., 2021)