EST Express: PHP/MySQL based automated annotation of ESTs from expression libraries. - Robin P. Smith; William J. Buchser; Marcus B. Lemmon; Jose R. Pardinas; John L. Bixby; Vance P. Lemmon (BMC Bioinform., 2008)

Bioassay Ontology to Describe High-Throughput Screening Assays and their Results. - Uma Vempati; Ubbo Visser; Saminda Abeyruwan; Kunie Sakurai; Magdalena Przydzial; Caty Chung; Robin P. Smith; Amar Koleti; Christopher Mader; Vance P. Lemmon; Stephan C. Schürer (ICBO, 2011)

BioAssay Ontology (BAO): A Semantic Description of Bioassays and High-Throughput Screening Results. - Ubbo Visser; Saminda Abeyruwan; Uma Vempati; Robin P. Smith; Vance P. Lemmon; Stephan C. Schürer (BMC Bioinform., 2011)

PrOntoLearn: Unsupervised Lexico-Semantic Ontology Generation Using Probabilistic Methods. - Saminda Abeyruwan; Ubbo Visser; Vance P. Lemmon; Stephan C. Schürer (URSW (LNCS Vol.), 2013)

Evolving BioAssay Ontology (BAO): modularization, integration and applications. - Saminda Abeyruwan; Uma D. Vempati; Hande Küçük-McGinty; Ubbo Visser; Amar Koleti; Ahsan Mir; Kunie Sakurai; Caty Chung; Joshua A. Bittker; Paul A. Clemons; Steve Brudz; Anosha Siripala; et al. (J. Biomed. Semant., 2014)

RegenBase: a knowledge base of spinal cord injury biology for translational research. - Alison Callahan; Saminda Abeyruwan; Hassan Al-Ali; Kunie Sakurai; Adam R. Ferguson; Phillip G. Popovich; Nigam H. Shah; Ubbo Visser; John L. Bixby; Vance P. Lemmon (Database J. Biol. Databases Curation, 2016)