Disease progression subtype discovery from longitudinal EMR data with a majority of missing values and unknown initial time points. - Ilkka Huopaniemi; Girish N. Nadkarni; Rajiv Nadukuru; Vaneet Lotay; Stephen B. Ellis; Omri Gottesman; Erwin P. Bottinger (AMIA, 2014)

Development and validation of an electronic phenotyping algorithm for chronic kidney disease. - Girish N. Nadkarni; Omri Gottesman; James G. Linneman; Herbert S. Chase; Richard L. Berg; Samira Farouk; Vaneet Lotay; Stephen B. Ellis; George Hripcsak; Peggy L. Peissig; Chunhua Weng; Rajiv Nadukuru; et al. (AMIA, 2014)

Visualization of Gene Expression and Expression as a Phenotype with the XPO, XAO and DO using a Combination of Experimental Data Sources. - Troy J. Pells; Malcolm E. Fisher; Erik Segerdell; Joshua D. Fortriede; Kevin A. Burns; Stanley Chu; Praneet Chaturvedi; Christina James-Zorn; Vaneet Lotay; Mardi J. Nenni; Virgilio G. Ponferrada; Dong Zhou Wang; et al. (ICBO, 2018)

Xenbase: a genomic, epigenomic and transcriptomic model organism database. - Kamran Karimi; Joshua D. Fortriede; Vaneet Lotay; Kevin A. Burns; Dong Zhou Wang; Malcolm E. Fisher; Troy J. Pells; Christina James-Zorn; Ying Wang; Virgilio G. Ponferrada; Stanley Chu; Praneet Chaturvedi; et al. (Nucleic Acids Res., 2018)

Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database. - Joshua D. Fortriede; Troy J. Pells; Stanley Chu; Praneet Chaturvedi; Dong Zhou Wang; Malcolm E. Fisher; Christina James-Zorn; Ying Wang; Mardi J. Nenni; Kevin A. Burns; Vaneet Lotay; Virgilio G. Ponferrada; et al. (Nucleic Acids Res., 2020)

Integration of 1: 1 orthology maps and updated datasets into Echinobase. - Saoirse Foley; Carolyn Ku; Brad Arshinoff; Vaneet Lotay; Kamran Karimi; Peter D. Vize; Veronica F. Hinman (Database J. Biol. Databases Curation, 2021)