An introduction to deep learning on biological sequence data: examples and solutions. - Vanessa Isabell Jurtz; Alexander Rosenberg Johansen; Morten Nielsen 001; José Juan Almagro Armenteros; Henrik Nielsen; Casper Kaae Sønderby; Ole Winther; Søren Kaae Sønderby (Bioinform., 2017)

A generic deep convolutional neural network framework for prediction of receptor-ligand interactions - NetPhosPan: application to kinase phosphorylation prediction. - Emilio Fenoy; José M. G. Izarzugaza; Vanessa Isabell Jurtz; Søren Brunak; Morten Nielsen 001 (Bioinform., 2019)

IEDB-AR: immune epitope database - analysis resource in 2019. - Sandeep Kumar Dhanda; Swapnil Mahajan; Sinu Paul; Zhen Yan; Haeuk Kim; Martin Closter Jespersen; Vanessa Isabell Jurtz; Massimo Andreatta; Jason A. Greenbaum; Paolo Marcatili; Alessandro Sette; Morten Nielsen 001; et al. (Nucleic Acids Res., 2019)