Comprehensive analysis of gene expression profiles to radiation exposure reveals molecular signatures of low-dose radiation response. - Xihaier Luo; Sean McCorkle; Gilchan Park; Vanessa López-Marrero; Shinjae Yoo; Edward R. Dougherty; Xiaoning Qian; Francis J. Alexander; Byung-Jun Yoon (BIBM, 2022)

Automated Extraction of Molecular Interactions and Pathway Knowledge using Large Language Model, Galactica: Opportunities and Challenges. - Gilchan Park; Byung-Jun Yoon; Xihaier Luo; Vanessa López-Marrero; Patrick R. Johnstone; Shinjae Yoo; Francis J. Alexander (BioNLP@ACL, 2023)

Comparative Performance Evaluation of Large Language Models for Extracting Molecular Interactions and Pathway Knowledge. - Gilchan Park; Byung-Jun Yoon; Xihaier Luo; Vanessa López-Marrero; Patrick R. Johnstone; Shinjae Yoo; Francis J. Alexander (CoRR, 2023)

Fourier neural operators for spatiotemporal dynamics in two-dimensional turbulence. - Mohammad Atif; Pulkit Dubey; Pratik P. Aghor; Vanessa López-Marrero; Tao Zhang; Abdullah Sharfuddin; Kwangmin Yu; Fan Yang; Foluso Ladeinde; Yangang Liu; Meifeng Lin; Lingda Li (SC Workshops, 2024)

Multi-Function Multi-Way Analog Technology for Sustainable Machine Intelligence Computation. - Vassilis Kalantzis; Mark S. Squillante; Shashanka Ubaru; Tayfun Gokmen; Chai Wah Wu; Anshul Gupta; Haim Avron; Tomasz Nowicki; Malte J. Rasch; O. Murat Onen; Vanessa López-Marrero; Effendi Leobandung; et al. (CoRR, 2024)

Pathway-based analyses of gene expression profiles at low doses of ionizing radiation. - Xihaier Luo; Seyednami Niyakan; Patrick R. Johnstone; Sean McCorkle; Gilchan Park; Vanessa López-Marrero; Shinjae Yoo; Edward R. Dougherty; Xiaoning Qian; Francis J. Alexander; Shantenu Jha; Byung-Jun Yoon (Frontiers Bioinform., 2024)

Towards accelerating particle-resolved direct numerical simulation with neural operators. - Mohammad Atif; Vanessa López-Marrero; Tao Zhang; Abdullah Sharfuddin; Kwangmin Yu; Jiaqi Yang; Fan Yang; Foluso Ladeinde; Yangang Liu; Meifeng Lin; Lingda Li (Stat. Anal. Data Min., 2024)

Density estimation via measure transport: Outlook for applications in the biological sciences. - Vanessa López-Marrero; Patrick R. Johnstone; Gilchan Park; Xihaier Luo (Stat. Anal. Data Min., 2024)

Comparative Performance Evaluation of Large Language Models for Extracting Molecular Interactions and Pathway Knowledge. - Gilchan Park; Byung-Jun Yoon; Xihaier Luo; Vanessa López-Marrero; Shinjae Yoo; Shantenu Jha (J. Comput. Biol., 2025)