A Rapid Learning System for Personalized Glioblastoma Treatment Planning. - Sam Finlayson; Vanessa V. Sochat; Linda Szabo; Luke Yancy Jr. (AMIA, 2013)

Translational Meta-analytical Methods to Localize the Regulatory Patterns of Neurological Disorders in the Human Brain. - Vanessa V. Sochat; Maude David; Dennis P. Wall (AMIA, 2015)

NeuroVault.org: a web-based repository for collecting and sharing unthresholded statistical maps of the human brain. - Krzysztof J. Gorgolewski; Gaël Varoquaux; Gabriel Rivera; Yannick Schwartz; Satrajit S. Ghosh; Camille Maumet; Vanessa V. Sochat; Thomas E. Nichols; Russell A. Poldrack; Jean-Baptiste Poline; Tal Yarkoni; Daniel S. Margulies (Frontiers Neuroinformatics, 2015)

AuthorSynth: a collaboration network and behaviorally-based visualization tool of activation reports from the neuroscience literature. - Vanessa V. Sochat (Frontiers Neuroinformatics, 2015)

NeuroVault.org: A repository for sharing unthresholded statistical maps, parcellations, and atlases of the human brain. - Krzysztof J. Gorgolewski; Gaël Varoquaux; Gabriel Rivera; Yannick Schwartz; Vanessa V. Sochat; Satrajit S. Ghosh; Camille Maumet; Thomas E. Nichols; Jean-Baptiste Poline; Tal Yarkoni; Daniel S. Margulies; Russell A. Poldrack (NeuroImage, 2016)

Singularity Registry: Open Source Registry for Singularity Images. - Vanessa V. Sochat (J. Open Source Softw., 2017)

AIM: An Abstraction for Improving Machine Learning Prediction. - Victoria Stodden; Xiaomian Wu; Vanessa V. Sochat (DSW, 2018)

The Experiment Factory: Reproducible Experiment Containers. - Vanessa V. Sochat (J. Open Source Softw., 2018)

HelpMe Command Line Helper Utility. - Vanessa V. Sochat (J. Open Source Softw., 2018)

Containershare: Open Source Registry to build, test, deploy with CircleCI. - Vanessa V. Sochat (J. Open Source Softw., 2018)

WatchMe: Software for Reproducible Monitoring and Data Collection. - Vanessa V. Sochat (J. Open Source Softw., 2019)

Container Tree: Software to Model Container Filesystems, Packages, and Inheritance. - Vanessa V. Sochat (J. Open Source Softw., 2019)

Singularity Compose: Orchestration for Singularity Instances. - Vanessa V. Sochat (J. Open Source Softw., 2019)

AskCI Server: Collaborative knowledge base. - Vanessa V. Sochat (PEARC, 2020)

AskCI Server: Collaborative and version controlled knowledge base. - Vanessa V. Sochat (CoRR, 2020)

GridTest: testing and metrics collection for Python. - Vanessa V. Sochat (J. Open Source Softw., 2020)

Ten simple rules for writing Dockerfiles for reproducible data science. - Daniel Nüst; Vanessa V. Sochat; Ben Marwick; Stephen J. Eglen; Tim Head; Tony Hirst; Benjamin D. Evans (PLoS Comput. Biol., 2020)

The 10 best practices for remote software engineering. - Vanessa V. Sochat (Commun. ACM, 2021)

A Fresh Look at FAIR for Research Software. - Daniel S. Katz; Morane Gruenpeter; Tom Honeyman; Lorraine J. Hwang; Mark D. Wilkinson; Vanessa V. Sochat; Hartwig Anzt; Carole A. Goble (CoRR, 2021)

Sustainable data analysis with Snakemake. - Felix Mölder; Kim Philipp Jablonski; Brice Letcher; Michael B. Hall; Christopher Tomkins-Tinch; Vanessa V. Sochat; Jan Forster; Soohyun Lee; Sven Twardziok; Alexander Kanitz; Andreas Wilm; Manuel Holtgrewe; et al. (F1000Research, 2021)

DataLad: distributed system for joint management of code, data, and their relationship. - Yaroslav O. Halchenko; Kyle Meyer; Benjamin Poldrack; Debanjum Singh Solanky; Adina S. Wagner; Jason Gors; Dave MacFarlane; Dorian Pustina; Vanessa V. Sochat; Satrajit S. Ghosh; Christian Mönch; Christopher J. Markiewicz; et al. (J. Open Source Softw., 2021)

Collaborative Container Modules with Singularity Registry HPC. - Vanessa V. Sochat; Alec Scott (J. Open Source Softw., 2021)

Software Compatibility Tool Agreement. - Vanessa V. Sochat; Tim Haines (CoRR, 2022)

Automated Cache for Container Executables. - Vanessa V. Sochat; Matthieu Muffato; Audrey Stott; Marco De La Pierre; Georgia Stuart (CoRR, 2022)

For the Public Good: Connecting, Retaining, and Recognizing Current and Future RSEs at U.S. National Research Laboratories and Agencies. - Miranda Mundt; Keith Beattie; Jonathan Bisila; Charles R. Ferenbaugh; William F. Godoy; Rinku Gupta; Jonathan E. Guyer; Miriam Kiran; Addi Malviya-Thakur; Reed Milewicz; Benjamin H. Sims; Vanessa V. Sochat; et al. (Comput. Sci. Eng., 2022)

CiteLang: Modeling the Research Software Ecosystem. - Vanessa V. Sochat (J. Open Source Softw., 2022)

The Flux Operator. - Vanessa V. Sochat; Aldo Culquicondor; Antonio Ojea; Daniel Milroy (CoRR, 2023)

bids-specification. - Aaron Oliver-Taylor; Adam Li; Adam G. Thomas; Adeen Flinker; Adina S. Wagner; Agah Karakuzu; Aki Nikolaidis; Alberto Lazari; Alejandro de la Vega; Alessio Giacomel; Alexander Rockhill; Alexander Jones; et al. (Zenodo, 2023)

Enabling Workload-Driven Elasticity in MPI-based Ensembles. - Md Rajib Hossen; Vanessa V. Sochat; Abhik Sarkar; Mohammad A. Islam 001; Daniel J. Milroy (CLUSTER, 2024)

Infrastructure Engineering: A Still Missing, Undervalued Role in the Research Ecosystem. - Vanessa V. Sochat (CoRR, 2024)

HPC Alongside User-space Kubernetes. - Vanessa V. Sochat; David Fox; Daniel Milroy (CoRR, 2024)

Converged Computing: A Best of Both Worlds of High-Performance Computing and Cloud. - Vanessa V. Sochat; Daniel Milroy; Claudia Misale; Jakob Lüttgau; Evan F. Bollig; William Magro (Comput. Sci. Eng., 2024)

The Brain Imaging Data Structure (BIDS) Specification. - Aaron Oliver-Taylor; Adam Li; Adam G. Thomas; Adeen Flinker; Adina S. Wagner; Agah Karakuzu; Aki Nikolaidis; Alberto Lazari; Alejandro de la Vega; Alessio Giacomel; Alexander Rockhill; Alexander Jones; et al. (Zenodo, 2024)

Usability Evaluation of Cloud for HPC Applications. - Vanessa V. Sochat; Daniel Milroy; Abhik Sarkar; Aniruddha Marathe; Tapasya Patki (CoRR, 2025)

The Brain Imaging Data Structure (BIDS) Specification. - Aaron Oliver-Taylor; Adam Li; Adam G. Thomas; Adeen Flinker; Adina S. Wagner; Agah Karakuzu; Agnese Zazio; Aki Nikolaidis; Alberto Lazari; Alejandro de la Vega; Alessio Giacomel; Alexander Rockhill; et al. (Zenodo, 2025)

Possible Futures for Cloud Cost Models. - Vanessa V. Sochat; Daniel Milroy (CoRR, 2025)