SUBATOMIC: a SUbgraph BAsed mulTi-OMIcs clustering framework to analyze integrated multi-edge networks. - Jens Uwe Loers; Vanessa Vermeirssen (BMC Bioinform., 2022)

Opportunities and challenges in interpretable deep learning for drug sensitivity prediction of cancer cells. - Bikash Ranjan Samal; Jens Uwe Loers; Vanessa Vermeirssen; Katleen De Preter (Frontiers Bioinform., 2022)

A single-cell multimodal view on gene regulatory network inference from transcriptomics and chromatin accessibility data. - Jens Uwe Loers; Vanessa Vermeirssen (Briefings Bioinform., 2024)