Social Interaction, Noise and Antibiotic-Mediated Switches in the Intestinal Microbiota. - Vanni Bucci; Serena Bradde; Giulio Biroli; João B. Xavier (PLoS Comput. Biol., 2012)

Ecological Modeling from Time-Series Inference: Insight into Dynamics and Stability of Intestinal Microbiota. - Richard R. Stein; Vanni Bucci; Nora C. Toussaint; Charlie G. Buffie; Gunnar Rätsch; Eric G. Pamer; Chris Sander; João B. Xavier (PLoS Comput. Biol., 2013)

ADAM-1: An AI Reasoning and Bioinformatics Model for Alzheimer's Disease Detection and Microbiome-Clinical Data Integration. - Ziyuan Huang; Vishaldeep Kaur Sekhon; Roozbeh Sadeghian; Maria L. Vaida; Cynthia Jo; Beth A. McCormick; Doyle Ward; Vanni Bucci; John P. Haran (IEEE Access, 2025)

ADAM-1: AI and Bioinformatics for Alzheimer's Detection and Microbiome-Clinical Data Integrations. - Ziyuan Huang; Vishaldeep Kaur Sekhon; Ouyang Guo; Mark Newman; Roozbeh Sadeghian; Maria L. Vaida; Cynthia Jo; Doyle Ward; Vanni Bucci; John P. Haran (CoRR, 2025)