IKRAFT: Interactive Knowledge Representation and Acquisition from Text. - Yolanda Gil; Varun Ratnakar (EKAW, 2002)

TRELLIS: An Interactive Tool for Capturing Information Analysis and Decision Making. - Yolanda Gil; Varun Ratnakar (EKAW, 2002)

A Comparison of (Semantic) Markup Languages. - Yolanda Gil; Varun Ratnakar (FLAIRS, 2002)

Trusting Information Sources One Citizen at a Time. - Yolanda Gil; Varun Ratnakar (ISWC, 2002)

User interfaces with semi-formal representations: a study of designing argumentation structures. - Timothy Chklovski; Varun Ratnakar; Yolanda Gil (IUI, 2005)

Metadata Catalogs with Semantic Representations. - Yolanda Gil; Varun Ratnakar; Ewa Deelman (IPAW, 2006)

Wings for Pegasus: A Semantic Approach to Creating Very Large Scientific Workflows. - Yolanda Gil; Jihie Kim; Varun Ratnakar; Ewa Deelman (OWLED, 2006)

Semantic Metadata Generation for Large Scientific Workflows. - Jihie Kim; Yolanda Gil; Varun Ratnakar (ISWC, 2006)

Wings for Pegasus: Creating Large-Scale Scientific Applications Using Semantic Representations of Computational Workflows. - Yolanda Gil; Varun Ratnakar; Ewa Deelman; Gaurang Mehta; Jihie Kim (AAAI, 2007)

Automating To-Do Lists for Users: Interpretation of To-Dos for Selecting and Tasking Agents. - Yolanda Gil; Varun Ratnakar (AAAI, 2008)

Designing and parameterizing a workflow for optimization: A case study in biomedical imaging. - Vijay S. Kumar; Mary W. Hall; Jihie Kim; Yolanda Gil; Tahsin M. Kurç; Ewa Deelman; Varun Ratnakar; Joel H. Saltz (IPDPS, 2008)

Towards intelligent assistance for to-do lists. - Yolanda Gil; Varun Ratnakar (IUI, 2008)

Provenance trails in the Wings/Pegasus system. - Jihie Kim; Ewa Deelman; Yolanda Gil; Gaurang Mehta; Varun Ratnakar (Concurr. Comput. Pract. Exp., 2008)

Special Issue: The First Provenance Challenge. - Luc Moreau 001; Bertram Ludäscher; Ilkay Altintas; Roger S. Barga; Shawn Bowers; Steven P. Callahan; George Chin Jr.; Ben Clifford; Shirley Cohen; Sarah Cohen Boulakia; Susan B. Davidson; Ewa Deelman; et al. (Concurr. Comput. Pract. Exp., 2008)

Expressive Reusable Workflow Templates. - Yolanda Gil; Paul Groth; Varun Ratnakar; Christian Fritz 001 (eScience, 2009)

An integrated framework for performance-based optimization of scientific workflows. - Vijay S. Kumar; P. Sadayappan; Gaurang Mehta; Karan Vahi; Ewa Deelman; Varun Ratnakar; Jihie Kim; Yolanda Gil; Mary W. Hall; Tahsin M. Kurç; Joel H. Saltz (HPDC, 2009)

Workflow matching using semantic metadata. - Yolanda Gil; Jihie Kim; Gonzalo Flórez Puga; Varun Ratnakar; Pedro A. González-Calero (K-CAP, 2009)

Social Task Networks: Personal and Collaborative Task Formulation and Management in Social Networking Sites. - Yolanda Gil; Paul Groth; Varun Ratnakar (AAAI Fall Symposium: Proactive Assistant Agents, 2010)

Assisting Scientists with Complex Data Analysis Tasks through Semantic Workflows. - Yolanda Gil; Varun Ratnakar; Christian Fritz 001 (AAAI Fall Symposium: Proactive Assistant Agents, 2010)

Parameterized specification, configuration and execution of data-intensive scientific workflows. - Vijay S. Kumar; Tahsin M. Kurç; Varun Ratnakar; Jihie Kim; Gaurang Mehta; Karan Vahi; Yoon-Ju Lee Nelson; P. Sadayappan; Ewa Deelman; Yolanda Gil; Mary W. Hall; Joel H. Saltz (Clust. Comput., 2010)

TellMe: learning procedures from tutorial instruction. - Yolanda Gil; Varun Ratnakar; Christian Fritz 001 (IUI, 2011)

Want world domination? win at risk!: matching to-do items with how-tos from the web. - Denny Vrandecic; Yolanda Gil; Varun Ratnakar (IUI, 2011)

Mind Your Metadata: Exploiting Semantics for Configuration, Adaptation, and Provenance in Scientific Workflows. - Yolanda Gil; Pedro A. Szekely; Sandra Villamizar; Thomas C. Harmon; Varun Ratnakar; Shubham Gupta; Maria Muslea; Fabio Silva; Craig A. Knoblock (ISWC (2), 2011)

Wings: Intelligent Workflow-Based Design of Computational Experiments. - Yolanda Gil; Varun Ratnakar; Jihie Kim; Pedro A. González-Calero; Paul Groth; Joshua Moody; Ewa Deelman (IEEE Intell. Syst., 2011)

A semantic framework for automatic generation of computational workflows using distributed data and component catalogues. - Yolanda Gil; Pedro A. González-Calero; Jihie Kim; Joshua Moody; Varun Ratnakar (J. Exp. Theor. Artif. Intell., 2011)

Shortipedia aggregating and curating Semantic Web data. - Denny Vrandecic; Varun Ratnakar; Markus Krötzsch; Yolanda Gil (J. Web Semant., 2011)

Organic Data Publishing: A Novel Approach to Scientific Data Sharing. - Yolanda Gil; Varun Ratnakar; Paul C. Hanson (LISC@ISWC, 2012)

Capturing Common Knowledge about Tasks: Intelligent Assistance for To-Do Lists. - Yolanda Gil; Varun Ratnakar; Timothy Chklovski; Paul Groth; Denny Vrandecic (ACM Trans. Interact. Intell. Syst., 2012)

Knowledge capture in the wild: a perspective from semantic wiki communities. - Yolanda Gil; Varun Ratnakar (K-CAP, 2013)

Time-bound analytic tasks on large datasets through dynamic configuration of workflows. - Yolanda Gil; Varun Ratnakar; Rishi Verma; Andrew F. Hart; Paul M. Ramirez; Chris Mattmann; Arni Sumarlidason; Samuel L. Park (WORKS@SC, 2013)

The Democratization of Semantic Properties: An Analysis of Semantic Wikis. - Yolanda Gil; Angela Knight; Kevin Zhang; Larry Zhang; Varun Ratnakar; Ricky J. Sethi (ICSC, 2013)

A Virtual Crowdsourcing Community for Open Collaboration in Science Processes. - Yolanda Gil; Matheus Hauder; Felix Michel; Varun Ratnakar (AMCIS, 2015)

A Task-Centered Framework for Computationally-Grounded Science Collaborations. - Yolanda Gil; Felix Michel; Varun Ratnakar; Matheus Hauder; Christopher J. Duffy; Hilary Dugan; Paul C. Hanson (e-Science, 2015)

A Semantic, Task-Centered Collaborative Framework for Science. - Yolanda Gil; Felix Michel; Varun Ratnakar; Matheus Hauder (ESWC (Satellite Events), 2015)

Supporting Open Collaboration in Science Through Explicit and Linked Semantic Description of Processes. - Yolanda Gil; Felix Michel; Varun Ratnakar; Jordan S. Read; Matheus Hauder; Christopher J. Duffy; Paul C. Hanson; Hilary Dugan (ESWC, 2015)

A Task-Centered Interface for On-Line Collaboration in Science. - Felix Michel; Yolanda Gil; Varun Ratnakar; Matheus Hauder (IUI Companion, 2015)

DRAT: An Unobtrusive, Scalable Approach to Large Scale Software License Analysis. - Chris A. Mattmann; Ji-Hyun Oh; Tyler Palsulich; Lewis John McGibbney; Yolanda Gil; Varun Ratnakar (ASE Workshops, 2015)

The Provenance Bee Wiki: Tracking the Growth of Semantic Wiki Communities. - Yolanda Gil; Dipsy Kapoor; Reed Markham; Varun Ratnakar (K-CAP, 2015)

OntoSoft: Capturing Scientific Software Metadata. - Yolanda Gil; Varun Ratnakar; Daniel Garijo (K-CAP, 2015)

OntoSoft: A distributed semantic registry for scientific software. - Yolanda Gil; Daniel Garijo; Saurabh Mishra; Varun Ratnakar (eScience, 2016)

Dynamically Generated Metadata and Replanning by Interleaving Workflow Generation and Execution. - Yolanda Gil; Varun Ratnakar (ICSC, 2016)

Towards Continuous Scientific Data Analysis and Hypothesis Evolution. - Yolanda Gil; Daniel Garijo; Varun Ratnakar; Rajiv Mayani; Ravali Adusumilli; Hunter Boyce; Arunima Srivastava; Parag Mallick (AAAI, 2017)

The DISK Hypothesis Ontology: Capturing Hypothesis Evolution for Automated Discovery. - Daniel Garijo; Yolanda Gil; Varun Ratnakar (K-CAP Workshops, 2017)

Improving Publication and Reproducibility of Computational Experiments through Workflow Abstractions. - Yolanda Gil; Daniel Garijo; Margaret Knoblock; Alyssa Deng; Ravali Adusumilli; Varun Ratnakar; Parag Mallick (K-CAP Workshops, 2017)

A Controlled Crowdsourcing Approach for Practical Ontology Extensions and Metadata Annotations. - Yolanda Gil; Daniel Garijo; Varun Ratnakar; Deborah Khider; Julien Emile-Geay; Nicholas McKay (ISWC (2), 2017)

Automatic Generation of Portions of Scientific Papers for Large Multi-Institutional Collaborations Based on Semantic Metadata. - Mihyun Jang; Tejal Patted; Yolanda Gil; Daniel Garijo; Varun Ratnakar; Jie Ji; Prince Wang; Aggie McMahon; Paul M. Thompson; Neda Jahanshad (SemSci@ISWC, 2017)

OKG-Soft: An Open Knowledge Graph with Machine Readable Scientific Software Metadata. - Daniel Garijo; Maximiliano Osorio; Deborah Khider; Varun Ratnakar; Yolanda Gil (eScience, 2019)

An intelligent interface for integrating climate, hydrology, agriculture, and socioeconomic models. - Daniel Garijo; Deborah Khider; Varun Ratnakar; Yolanda Gil; Ewa Deelman; Rafael Ferreira da Silva; Craig A. Knoblock; Yao-Yi Chiang; Minh Pham 004; Jay Pujara; Binh Vu; Dan Feldman; et al. (IUI Companion, 2019)

Semantic workflows for benchmark challenges: Enhancing comparability, reusability and reproducibility. - Arunima Srivastava; Ravali Adusumilli; Hunter Boyce; Daniel Garijo; Varun Ratnakar; Rajiv Mayani; Thomas Yu; Raghu Machiraju; Yolanda Gil; Parag Mallick (PSB, 2019)

Towards Automated Hypothesis Testing in Neuroscience. - Daniel Garijo; Shobeir Fakhraei; Varun Ratnakar; Qifan Yang; Hanna Endrias; Yibo Ma; Regina Wang; Michael Bornstein; Joanna Bright; Yolanda Gil; Neda Jahanshad (Poly/DMAH@VLDB, 2019)

The Linked Earth Ontology: A Modular, Extensible Representation of Open Paleoclimate Data. - Julien Emile-Geay; Deborah Khider; Daniel Garijo; Nicholas McKay; Yolanda Gil; Varun Ratnakar; Elizabeth Bradley (Zenodo, 2019)

Towards Democratizing Modeling at Scale. - Yolanda Gil; Maximiliano Osorio; Varun Ratnakar; Suzanne A. Pierce; Je'aime Powell; Nick Thorne; Peter Lubbs (e-Science, 2021)

Artificial Intelligence for Modeling Complex Systems: Taming the Complexity of Expert Models to Improve Decision Making. - Yolanda Gil; Daniel Garijo; Deborah Khider; Craig A. Knoblock; Varun Ratnakar; Maximiliano Osorio; Hernán Vargas; Minh Pham 004; Jay Pujara; Basel Shbita; Binh Vu; Yao-Yi Chiang; et al. (ACM Trans. Interact. Intell. Syst., 2021)

Towards Capturing Scientific Reasoning to Automate Data Analysis. - Yolanda Gil; Deborah Khider; Maximiliano Osorio; Varun Ratnakar; Hernán Vargas; Daniel Garijo; Suzanne A. Pierce (CogSci, 2022)

DISK: Automated DIscovery of Scientific Knowledge. - Hernán Vargas; Varun Ratnakar; Qifan Yang; Daniel Garijo; Yolanda Gil; Neda Jahanshad (Zenodo, 2024)