Variational autoencoder as a generative tool to produce de-novo lead compounds for biological targets. - Varun Ullanat (IIT, 2020)

PrISM: precision for integrative structural models. - Varun Ullanat; Nikhil Kasukurthi; Shruthi Viswanath (Bioinform., 2022)

Multiplex Imaging Analysis in Pathology: a Comprehensive Review on Analytical Approaches and Digital Toolkits. - Mohamed Omar; Giuseppe Nicoló Fanelli; Fabio Socciarelli; Varun Ullanat; Sreekar Reddy Puchala; James Wen; Alexander Chowdhury; Itzel Valencia; Cristian Scatena; Luigi Marchionni; Renato Umeton; Massimo Loda (CoRR, 2024)

Multimodal AI predicts clinical outcomes of drug combinations from preclinical data. - Yepeng Huang; Xiao-Rui Su 001; Varun Ullanat; Ivy Liang; Lindsay Clegg; Damilola Olabode; Nicholas Ho; Bino John; Megan Gibbs; Marinka Zitnik (CoRR, 2025)

Red Teaming for Generative AI, Report on a Copyright-Focused Exercise Completed in an Academic Medical Center. - James Wen; Sahil S. Nalawade; Zhiwei Liang; Catherine Bielick; Marisa Ferrara Boston; Alexander Chowdhury; Adele Collin; Luigi De Angelis; Jacob Ellen; Heather Frase; Rodrigo R. Gameiro; Juan Manuel Gutierrez; et al. (CoRR, 2025)