A Novel Network Representation of SARS-CoV-2 Sequencing Data. - Sergey Knyazev; Daniel Novikov; Mark Grinshpon; Harman Singh; Ram Ayyala; Varuni Sarwal; Roya Hosseini; Pelin Icer Baykal; Pavel Skums; Ellsworth Campbell; Serghei Mangul; Alex Zelikovsky (ISBRA, 2021)

TAMPA: interpretable analysis and visualization of metagenomics-based taxon abundance profiles. - Varuni Sarwal; Serghei Mangul; David Koslicki (IPDPS Workshops, 2022)

A comprehensive benchmarking of WGS-based deletion structural variant callers. - Varuni Sarwal; Sebastian Niehus; Ram Ayyala; Minyoung Kim; Aditya Sarkar; Sei Chang; Angela Lu; Neha Rajkumar; Nicholas Darci-Maher; Russell Littman; Karishma Chhugani; Arda Soylev; et al. (Briefings Bioinform., 2022)

Packaging, containerization, and virtualization of computational omics methods: Advances, challenges, and opportunities. - Mohammed Alser; Sharon Waymost; Ram Ayyala; Brendan Lawlor; Richard J. Abdill; Neha Rajkumar; Nathan LaPierre; Jaqueline J. Brito; Andre M. Ribeiro-dos-Santos; Can Firtina; Nour Almadhoun; Varuni Sarwal; et al. (CoRR, 2022)

VISTA: an integrated framework for structural variant discovery. - Varuni Sarwal; Seungmo Lee; Jianzhi Yang; Sriram Sankararaman; Mark Chaisson; Eleazar Eskin; Serghei Mangul (Briefings Bioinform., 2024)