A web server to locate periodicities in a sequence. - C. M. Pasquier; Vasilis J. Promponas; N. J. Varvayannis; Stavros J. Hamodrakas (Bioinform., 1998)

CoPreTHi: A Web tool which combines transmembrane protein segment prediction methods. - Vasilis J. Promponas; G. A. Palaios; C. M. Pasquier; J. S. Hamodrakas; Stavros J. Hamodrakas (Silico Biol., 1998)

CAST: an iterative algorithm for the complexity analysis of sequence tracts. - Vasilis J. Promponas; Anton J. Enright; Sophia Tsoka; David P. Kreil; Christophe Leroy; Stavros J. Hamodrakas; Chris Sander; Christos A. Ouzounis (Bioinform., 2000)

Evaluation of annotation strategies using an entire genome sequence. - Ioannis Iliopoulos; Sophia Tsoka; Miguel A. Andrade; Anton J. Enright; Mark Carroll; Patrick Poullet; Vasilis J. Promponas; Theodore Liakopoulos; Giorgos Palaios; Claude Pasquier; Stavros J. Hamodrakas; Javier Tamames; et al. (Bioinform., 2003)

GeneViTo: Visualizing gene-product functional and structural features in genomic datasets. - Georgios S. Vernikos; Christos G. Gkogkas; Vasilis J. Promponas; Stavros J. Hamodrakas (BMC Bioinform., 2003)

PRED-GPCR: GPCR recognition and family classification server. - Panagiotis K. Papasaikas; Pantelis G. Bagos; Zoi I. Litou; Vasilis J. Promponas; Stavros J. Hamodrakas (Nucleic Acids Res., 2004)

Clustering of biological time series by cepstral coefficients based distances. - Alexios Savvides; Vasilis J. Promponas; Konstantinos Fokianos (Pattern Recognit., 2008)

Protein Secondary Structure Prediction with Bidirectional Recurrent Neural Nets: Can Weight Updating for Each Residue Enhance Performance? - Michalis Agathocleous; Georgia Christodoulou; Vasilis J. Promponas; Chris Christodoulou; Vassilis Vassiliades; Antonis Antoniou (AIAI, 2010)

Spectral density ratio based clustering methods for the binary segmentation of protein sequences: A comparative study. - Alexis Ioannou; Konstantinos Fokianos; Vasilis J. Promponas (Biosyst., 2010)

BioTextQuest: a web-based biomedical text mining suite for concept discovery. - Nikolas Papanikolaou; Evangelos Pafilis; Stavros Nikolaou; Christos A. Ouzounis; Ioannis Iliopoulos; Vasilis J. Promponas (Bioinform., 2011)

Open source workflow systems in life sciences informatics. - Kleo G. Achilleos; Christos C. Kannas; Christos A. Nicolaou; Constantinos S. Pattichis; Vasilis J. Promponas (BIBE, 2012)

Opportunities from the use of FPGAs as platforms for bioinformatics algorithms. - Grigorios Chrysos 001; Euripides Sotiriades; Christos Rousopoulos; Apostolos Dollas; Agathoklis Papadopoulos; Ioannis Kirmitzoglou; Vasilis J. Promponas; Theocharis Theocharides; George Petihakis 001; Jacques Lagnel; Panagiotis Vavylis; George Kotoulas (BIBE, 2012)

A workflow system for virtual screening in cancer chemoprevention. - Christos C. Kannas; Kleo G. Achilleos; Zinonas C. Antoniou; Christos A. Nicolaou; Constantinos S. Pattichis; Ioanna Kalvari; Ioannis Kirmitzoglou; Vasilis J. Promponas (BIBE, 2012)

Sequence features of Compositionally Biased regions in three dimensional protein structures. - Stella Tamana; Ioannis Kirmitzoglou; Vasilis J. Promponas (BIBE, 2012)

Towards systolic hardware acceleration for local complexity analysis of massive genomic data. - Agathoklis Papadopoulos; Vasilis J. Promponas; Theocharis Theocharides (ACM Great Lakes Symposium on VLSI, 2012)

LaTcOm: a web server for visualizing rare codon clusters in coding sequences. - Athina Theodosiou; Vasilis J. Promponas (Bioinform., 2012)

A Comparative Study on Filtering Protein Secondary Structure Prediction. - Petros Kountouris; Michalis Agathocleous; Vasilis J. Promponas; Georgia Christodoulou; Simos Hadjicostas; Vassilis Vassiliades; Chris Christodoulou (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

GPU technology as a platform for accelerating local complexity analysis of protein sequences. - Agathoklis Papadopoulos; Ioannis Kirmitzoglou; Vasilis J. Promponas; Theocharis Theocharides (EMBC, 2013)

FPGA-based hardware acceleration for local complexity analysis of massive genomic data. - Agathoklis Papadopoulos; Ioannis Kirmitzoglou; Vasilis J. Promponas; Theocharis Theocharides (Integr., 2013)

Experimental evidence validating the computational inference of functional associations from gene fusion events: a critical survey. - Vasilis J. Promponas; Christos A. Ouzounis; Ioannis Iliopoulos (Briefings Bioinform., 2014)

BioTextQuest+: a knowledge integration platform for literature mining and concept discovery. - Nikolas Papanikolaou; Georgios A. Pavlopoulos; Evangelos Pafilis; Theodosios Theodosiou; Reinhard Schneider 002; Venkata P. Satagopam; Christos A. Ouzounis; Aristides G. Eliopoulos; Vasilis J. Promponas; Ioannis Iliopoulos (Bioinform., 2014)

Reconfiguring the Bioinformatics Computational Spectrum: Challenges and Opportunities of FPGA-Based Bioinformatics Acceleration Platforms. - Grigorios Chrysos 001; Euripides Sotiriades; Christos Rousopoulos; K. Pramataris; Ioannis Papaefstathiou; Apostolos Dollas; Agathoklis Papadopoulos; Ioannis Kirmitzoglou; Vasilis J. Promponas; Theo Theocharides; George Petihakis 001; Jacques Lagnel (IEEE Des. Test, 2014)

Editorial: Intelligent Biomedical Systems. - Efthyvoulos C. Kyriacou; Vasilis J. Promponas; Ilias Maglogiannis; Christos N. Schizas; Constantinos S. Pattichis (Int. J. Artif. Intell. Tools, 2014)

Guest Editorial: Computational Solutions to Large-Scale Data Management and Analysis in Translational and Personalized Medicine. - Manolis Tsiknakis; Vasilis J. Promponas; Norbert M. Graf; May D. Wang; Stephen T. C. Wong; Nikolaos G. Bourbakis; Constantinos S. Pattichis (IEEE J. Biomed. Health Informatics, 2014)

LCR-eXXXplorer: a web platform to search, visualize and share data for low complexity regions in protein sequences. - Ioannis Kirmitzoglou; Vasilis J. Promponas (Bioinform., 2015)

BioTextQuest+: a knowledge integration platform for literature mining and concept discovery. - Nikolas Papanikolaou; Georgios A. Pavlopoulos; Evangelos Pafilis; Theodosios Theodosiou; Reinhard Schneider 002; Venkata P. Satagopam; Christos A. Ouzounis; Aristides G. Eliopoulos; Vasilis J. Promponas; Ioannis Iliopoulos (Bioinform., 2015)

Training Bidirectional Recurrent Neural Network Architectures with the Scaled Conjugate Gradient Algorithm. - Michalis Agathocleous; Chris Christodoulou; Vasilis J. Promponas; Petros Kountouris; Vassilis Vassiliades (ICANN (1), 2016)

Convolutional Neural Networks in Combination with Support Vector Machines for Complex Sequential Data Classification. - Antreas Dionysiou; Michalis Agathocleous; Chris Christodoulou; Vasilis J. Promponas (ICANN (2), 2018)

Establishment of computational biology in Greece and Cyprus: Past, present, and future. - Anastasia Chasapi; Michalis Aivaliotis; Lefteris Angelis; Anastasios Chanalaris; Ioannis Iliopoulos; Ilias Kappas; Christos Karapiperis; Nikos Kyrpides; Evangelos Pafilis; Eleftherios Panteris; Pantelis Topalis; George Tsiamis; et al. (PLoS Comput. Biol., 2019)

Disentangling the complexity of low complexity proteins. - Pablo Mier; Lisanna Paladin; Stella Tamana; Sophia Petrosian; Borbála Hajdu-Soltész; Annika Urbanek; Aleksandra Gruca; Dariusz Plewczynski; Marcin Grynberg; Pau Bernadó; Zoltán Gáspári; Christos A. Ouzounis; et al. (Briefings Bioinform., 2020)

The bioinformatics wealth of nations. - Anastasia Chasapi; Vasilis J. Promponas; Christos A. Ouzounis (Bioinform., 2020)

DisProt: intrinsic protein disorder annotation in 2020. - András Hatos; Borbála Hajdu-Soltész; Alexander Miguel Monzon; Nicolas Palopoli; Lucía Álvarez; Burcu Aykaç Fas; Claudio Bassot; Guillermo I. Benítez; Martina Bevilacqua; Anastasia Chasapi; Lucía B. Chemes; Norman E. Davey; et al. (Nucleic Acids Res., 2020)

PlaToLoCo: the first web meta-server for visualization and annotation of low complexity regions in proteins. - Patryk Jarnot; Joanna Ziemska-Legiecka; Laszlo Dobson; Matthew Merski; Pablo Mier; Miguel A. Andrade-Navarro; John M. Hancock; Zsuzsanna Dosztányi; Lisanna Paladin; Marco Necci; Damiano Piovesan; Silvio C. E. Tosatto; et al. (Nucleic Acids Res., 2020)

Solving the Protein Secondary Structure Prediction Problem With the Hessian Free Optimization Algorithm. - Konstantinos Charalampous; Michalis Agathocleous; Chris Christodoulou; Vasilis J. Promponas (IEEE Access, 2022)

DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation. - Federica Quaglia; Bálint Mészáros; Edoardo Salladini; András Hatos; Rita Pancsa; Lucía B. Chemes; Mátyás Pajkos; Tamas Lazar; Samuel Peña-Díaz; Jaime Santos; Veronika Ács; Nazanin Farahi; et al. (Nucleic Acids Res., 2022)

CGG toolkit: Software components for computational genomics. - Dimitrios Vasileiou; Christos Karapiperis; Ismini Baltsavia; Anastasia Chasapi; Dag G. Ahrén; Paul J. Janssen; Ioannis Iliopoulos; Vasilis J. Promponas; Anton J. Enright; Christos A. Ouzounis (PLoS Comput. Biol., 2023)