Multiscale Hy3S: Hybrid stochastic simulation for supercomputers. - Howard M. Salis; Vassilios Sotiropoulos; Yiannis N. Kaznessis (BMC Bioinform., 2006)

Synthetic tetracycline-inducible regulatory networks: computer-aided design of dynamic phenotypes. - Vassilios Sotiropoulos; Yiannis N. Kaznessis (BMC Syst. Biol., 2007)

Nonlinear observer design for state and disturbance estimation. - Costas Kravaris; Vassilios Sotiropoulos; Costas Georgiou; Nikolaos Kazantzis; MingQing Xiao 001; Arthur J. Krener (Syst. Control. Lett., 2007)

Multiscale Models for Synthetic Biology. - Yiannis N. Kaznessis; Vassilios Sotiropoulos; Anthony D. Hill; Jonathan R. Tomshine; Katherine Volzing; John Barrett; Emma M. B. Weeding (BIOCOMP, 2008)

SynBioSS: the synthetic biology modeling suite. - Anthony D. Hill; Jonathan R. Tomshine; Emma M. B. Weeding; Vassilios Sotiropoulos; Yiannis N. Kaznessis (Bioinform., 2008)

Model Reduction of Multiscale Chemical Langevin Equations: A Numerical Case Study. - Vassilios Sotiropoulos; Marie-Nathalie Contou-Carrere; Prodromos Daoutidis; Yiannis N. Kaznessis (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

Model reduction of multi-scale chemical Langevin equations. - Marie-Nathalie Contou-Carrere; Vassilios Sotiropoulos; Yiannis N. Kaznessis; Prodromos Daoutidis (Syst. Control. Lett., 2011)