Speeding up whole-genome alignment by indexing frequency vectors. - Tamer Kahveci; Vebjorn Ljosa; Ambuj K. Singh (Bioinform., 2004)

Current Challenges in Bioimage Database Design. - Ambuj K. Singh; Arnab Bhattacharya 001; Vebjorn Ljosa (CSB Workshops, 2005)

ViVo: Visual Vocabulary Construction for Mining Biomedical Images. - Arnab Bhattacharya 001; Vebjorn Ljosa; Jia-Yu Pan; Mark R. Verardo; Hyung-Jeong Yang; Christos Faloutsos; Ambuj K. Singh (ICDM, 2005)

Indexing Spatially Sensitive Distance Measures Using Multi-resolution Lower Bounds. - Vebjorn Ljosa; Arnab Bhattacharya 001; Ambuj K. Singh (EDBT, 2006)

LB-Index: A Multi-Resolution Index Structure for Images. - Vebjorn Ljosa; Arnab Bhattacharya 001; Ambuj K. Singh (ICDE, 2006)

Probabilistic Segmentation and Analysis of Horizontal Cells. - Vebjorn Ljosa; Ambuj K. Singh (ICDM, 2006)

APLA: Indexing Arbitrary Probability Distributions. - Vebjorn Ljosa; Ambuj K. Singh (ICDE, 2007)

Top-k Spatial Joins of Probabilistic Objects. - Vebjorn Ljosa; Ambuj K. Singh (ICDE, 2008)

Introduction to the Quantitative Analysis of Two-Dimensional Fluorescence Microscopy Images for Cell-Based Screening. - Vebjorn Ljosa; Anne E. Carpenter (PLoS Comput. Biol., 2009)

Image Management for Biological Data. - Arnab Bhattacharya 001; Vebjorn Ljosa (Encyclopedia of Database Systems, 2009)

Resolving clustered worms via probabilistic shape models. - Carolina Wählby; Tammy Riklin-Raviv; Vebjorn Ljosa; Annie L. Conery; Polina Golland; Frederick M. Ausubel; Anne E. Carpenter (ISBI, 2010)

Morphology-Guided Graph Search for Untangling Objects: C. elegans Analysis. - Tammy Riklin Raviv; Vebjorn Ljosa; Annie L. Conery; Frederick M. Ausubel; Anne E. Carpenter; Polina Golland; Carolina Wählby (MICCAI (3), 2010)

Towards automated high-throughput screening of C. elegans on agar - Mayank Kabra; Annie L. Conery; Eyleen J. O'Rourke; Xin Xie; Vebjorn Ljosa; Thouis R. Jones; Frederick M. Ausubel; Gary Ruvkun; Anne E. Carpenter; Yoav Freund (CoRR, 2010)

Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software. - Lee Kamentsky; Thouis R. Jones; Adam Fraser; Mark-Anthony Bray; David J. Logan; Katherine L. Madden; Vebjorn Ljosa; Curtis Rueden; Kevin W. Eliceiri; Anne E. Carpenter (Bioinform., 2011)

CellProfiler Analyst: interactive data exploration, analysis and classification of large biological image sets. - David Dao; Adam Fraser; Jane Hung; Vebjorn Ljosa; Shantanu Singh; Anne E. Carpenter (Bioinform., 2016)

Image Management for Biological Data. - Arnab Bhattacharya 001; Vebjorn Ljosa (Encyclopedia of Database Systems (2nd ed.), 2018)