A simple and fast method to determine the parameters for fuzzy c-means cluster analysis. - Veit Schwämmle; Ole Nørregaard Jensen (Bioinform., 2010)

Tools and data services registry: a community effort to document bioinformatics resources. - Jon C. Ison; Kristoffer Rapacki; Hervé Ménager; Matús Kalas; Emil Rydza; Piotr Chmura; Christian Anthon; Niall Beard; Karel Berka; Dan M. Bolser; Tim Booth; Anthony Bretaudeau; et al. (Nucleic Acids Res., 2016)

Automated Composition of Scientific Workflows in Mass Spectrometry-Based Proteomics. - Anna-Lena Lamprecht; Magnus Palmblad; Jon C. Ison; Veit Schwämmle (eScience, 2018)

VSClust: feature-based variance-sensitive clustering of omics data. - Veit Schwämmle; Ole Nørregaard Jensen (Bioinform., 2018)

Automated workflow composition in mass spectrometry-based proteomics. - Magnus Palmblad; Anna-Lena Lamprecht; Jon C. Ison; Veit Schwämmle (Bioinform., 2019)

JIB.tools 2.0 - A Bioinformatics Registry for Journal Published Tools with Interoperability to bio.tools. - Marcel Friedrichs; Alban Shoshi; Piotr Chmura; Jon C. Ison; Veit Schwämmle; Falk Schreiber; Ralf Hofestädt; Björn Sommer 001 (J. Integr. Bioinform., 2019)

CoExpresso: assess the quantitative behavior of protein complexes in human cells. - Morteza Chalabi Hajkarim; Vasileios Tsiamis; Lukas Käll; Fabio Vandin; Veit Schwämmle (BMC Bioinform., 2019)

Community curation of bioinformatics software and data resources. - Jon C. Ison; Hervé Ménager; Bryan Brancotte; Erik Jaaniso; Ahto Salumets; Tomás Racek; Anna-Lena Lamprecht; Magnus Palmblad; Matús Kalas; Piotr Chmura; John M. Hancock; Veit Schwämmle; et al. (Briefings Bioinform., 2020)

Perspectives on automated composition of workflows in the life sciences. - Anna-Lena Lamprecht; Magnus Palmblad; Jon C. Ison; Veit Schwämmle; Mohammad Sadnan Al Manir; Ilkay Altintas; Christopher J. O. Baker; Ammar Ben Hadj Amor; Salvador Capella-Gutiérrez; Paulos Charonyktakis; Michael R. Crusoe; Yolanda Gil; et al. (F1000Research, 2021)

MS2AI: automated repurposing of public peptide LC-MS data for machine learning applications. - Tobias Greisager Rehfeldt; Konrad Krawczyk; Mathias Bøgebjerg; Veit Schwämmle; Richard Röttger (Bioinform., 2022)

VIQoR: a web service for visually supervised protein inference and protein quantification. - Vasileios Tsiamis; Veit Schwämmle (Bioinform., 2022)

Privacy-Preserving Multi-Center Differential Protein Abundance Analysis with FedProt. - Yuliya Burankova; Miriam Abele; Mohammad Bakhtiari; Christine von Törne; Teresa Barth; Lisa Schweizer; Pieter Giesbertz; Johannes R. Schmidt; Stefan Kalkhof; Janina Müller-Deile; Peter A. van Veelen; Yassene Mohammed; et al. (CoRR, 2024)