A Thrifty Annotation Generation Approach for Semantic Segmentation of Biofilms. - Adithi D. Chakravarthy; Parvathi Chundi; Mahadevan Subramaniam; Shankarachary Ragi; Venkataramana Gadhamshetty (BIBE, 2020)

GenNER - A highly scalable and optimal NER method for text-based gene and protein recognition. - Ernest Basile Fotseu Fotseu; Thierry Kongne Nembot; Rajesh Kumar Sani; Venkataramana Gadhamshetty; Etienne Z. Gnimpieba; Alain Bertrand Bomgni (BIBM, 2021)

Automatic Extension of Medical Subject Headings (MeSH) Thesaurus to Emerging Research. - William Gasper; Jiahao Ma; Dario Ghersi; Etienne Z. Gnimpieba; Venkataramana Gadhamshetty; Parvathi Chundi (BIBM, 2021)

Leveraging Weak annotations for Deep learning tasks on Biofilm Images. - Vidya Bommanapally; Md Ashaduzzman; Mahadevan Subramaniam; Suvarna Talluri; Venkataramana Gadhamshetty (BIBM, 2022)

U-Net Based Image Segmentation Techniques for Development of Non-Biocidal Fouling-Resistant Ultra-Thin Two-dimensional (2D) Coatings. - Bichar Dip Shrestha Gurung; Ramesh Devadig; Tuyen Do; Venkataramana Gadhamshetty; Etienne Z. Gnimpieba (BIBM, 2022)

Using BASIN-ML for Machine Learning-Based Statistical Analysis and Reporting for Biofilm Datasets. - Sam Haas; Timothy W. Hartman; Bichar Dip Shrestha Gurung; Tuyen Do; Rajesh Kumar Sani; Venkataramana Gadhamshetty; Etienne Z. Gnimpieba (BIBM, 2022)

Semantic Image Segmentation Using Scant Pixel Annotations. - Adithi D. Chakravarthy; Dilanga Abeyrathna; Mahadevan Subramaniam; Parvathi Chundi; Venkataramana Gadhamshetty (Mach. Learn. Knowl. Extr., 2022)

Fine-tuning a pre-trained Transformers-based model for gene name entity recognition in biomedical text using a customized dataset: case of Desulfovibrio vulgaris Hildenborough. - Alain Bertrand Bomgni; Dialo Abdala; Bichar Dip Shrestha Gurung; Marcellin Julius Antonio Nkenlifack; Venkataramana Gadhamshetty; Etienne Z. Gnimpieba (BIBM, 2023)

NLPADADE: Leveraging Natural Language Processing for Automated Detection of Adverse Drug Effects. - Alain Bertrand Bomgni; Claude Epiphanie Mbotchack Ngale; Shiva Aryal; Marcellin Julius Antonio Nkenlifack; Venkataramana Gadhamshetty; Etienne Z. Gnimpieba (BIBM, 2023)

Self-Supervised Scribble-based Segmentation of Single Cells in Biofilms. - Vidya Bommanapally; Mahadevan Subramaniam; Suvarna Talluri; Venkataramana Gadhamshetty; Juneau Jones (BIBM, 2023)

Computational methods for biofouling and corrosion-resistant graphene nanocomposites. A transdisciplinary approach. - Ramesh Devadig; Bichar Dip Shrestha Gurung; Etienne Z. Gnimpieba; Bharath Jasthi; Venkataramana Gadhamshetty (BIBM, 2023)

Utilizing XGBoost for the Prediction of Material Corrosion Rates from Embedded Tabular Data using Large Language Model. - Tuyen Do; Bichar Dip Shrestha Gurung; Shiva Aryal; Anup Khanal; Sandeep Chataut; Venkataramana Gadhamshetty; Carol Lushbough; Etienne Z. Gnimpieba (BIBM, 2023)

Transformer in Microbial Image Analysis: A Comparative Exploration of TransUNet, UNet, and DoubleUNet for SEM Image Segmentation. - Bichar Dip Shrestha Gurung; Anup Khanal; Timothy W. Hartman; Tuyen Do; Sandeep Chataut; Carol Lushbough; Venkataramana Gadhamshetty; Etienne Z. Gnimpieba (BIBM, 2023)

Machine Learning-Assisted Optical Detection of Multilayer Hexagonal Boron Nitride for Enhanced Characterization and Analysis. - Md Hasanur Rahman 004; Vidya Bommanapally; Dilanga Abeyrathna; Md Ashaduzzman; Manoj Tripathi; Mahzuzah Zahan; Mahadevan Subramaniam; Venkataramana Gadhamshetty (BIBM, 2023)

BiofilmScanner: A Computational Intelligence Approach to Obtain Bacterial Cell Morphological Attributes from Biofilm Image. - Md Hafizur Rahman; Md. Ali Azam; Md. Abir Hossen; Shankarachary Ragi; Venkataramana Gadhamshetty (CoRR, 2023)

Artificial Intelligence-Driven Image Analysis of Bacterial Cells and Biofilms. - Shankarachary Ragi; Md Hafizur Rahman; Jamison Duckworth; Kalimuthu Jawaharraj; Parvathi Chundi; Venkataramana Gadhamshetty (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

AIM-HKR: AI-Driven Molecular Retrosynthesis Using Heterogeneous Knowledge Representations. - Alain Bertrand Bomgni; Ribot Fleury Téné Ceskoutsé; Kevin Jordan Njike Njingang; Thomas Bouétou Bouétou; Venkataramana Gadhamshetty; Etienne Gnimpieba Zohim (BIBM, 2024)

Enhancing Sulphate Reducing Bacteria Clustering by Implementing UMAP on Raman Spectroscopy Data. - Md Hasanur Rahman 004; Bichar Dip Shrestha Gurung; Manoj Tripathi; Alan Dalton; Venkataramana Gadhamshetty; Etienne Z. Gnimpieba (BIBM, 2024)

Biofilm marker discovery with cloud-based dockerized metagenomics analysis of microbial communities. - Etienne Z. Gnimpieba; Timothy W. Hartman; Tuyen Do; Jessica Zylla; Shiva Aryal; Samuel J. Haas; Diing D. M. Agany; Bichar Dip Shrestha Gurung; Valena Doe; Zelaikha B. Yosufzai; Daniel Pan; Ross Campbell; et al. (Briefings Bioinform., 2024)

Leveraging Multi-AI Agents for Cross-Domain Knowledge Discovery. - Shiva Aryal; Tuyen Do; Bisesh Heyojoo; Sandeep Chataut; Bichar Dip Shrestha Gurung; Venkataramana Gadhamshetty; Etienne Z. Gnimpieba (CoRR, 2024)