Assessment of phylogenomic and orthology approaches for phylogenetic inference. - Bas E. Dutilh; Vera van Noort; René T. J. M. van der Heijden; T. Boekhout; Berend Snel; Martijn A. Huynen (Bioinform., 2007)

Orthology prediction at scalable resolution by phylogenetic tree analysis. - René T. J. M. van der Heijden; Berend Snel; Vera van Noort; Martijn A. Huynen (BMC Bioinform., 2007)

Drug-Induced Regulation of Target Expression. - Murat Iskar; Monica Campillos; Michael Kuhn 004; Lars Juhl Jensen; Vera van Noort; Peer Bork (PLoS Comput. Biol., 2010)

Prediction of Drug Combinations by Integrating Molecular and Pharmacological Data. - Xing-Ming Zhao; Murat Iskar; Georg Zeller; Michael Kuhn 004; Vera van Noort; Peer Bork (PLoS Comput. Biol., 2011)

Human Monogenic Disease Genes Have Frequently Functionally Redundant Paralogs. - Wei-Hua Chen; Xing-Ming Zhao; Vera van Noort; Peer Bork (PLoS Comput. Biol., 2013)

Comments on "Human Dominant Disease Genes Are Enriched in Paralogs Originating from Whole Genome Duplication". - Wei-Hua Chen; Xing-Ming Zhao; Vera van Noort; Peer Bork (PLoS Comput. Biol., 2014)

CART - a chemical annotation retrieval toolkit. - Samy Deghou; Georg Zeller; Murat Iskar; Marja Driessen; Mercedes Castillo; Vera van Noort; Peer Bork (Bioinform., 2016)

Evolutionary conservation of Ebola virus proteins predicts important functions at residue level. - Ahmed Arslan; Vera van Noort (Bioinform., 2017)

yMap: an automated method to map yeast variants to protein modifications and functional regions. - Ahmed Arslan; Vera van Noort (Bioinform., 2017)

ARA-PEPs: a repository of putative sORF-encoded peptides in Arabidopsis thaliana. - Rashmi R. Hazarika; Barbara De Coninck; Lidia R. Yamamoto; Laura R. Martin; Bruno P. A. Cammue; Vera van Noort (BMC Bioinform., 2017)

Molecular dynamics shows complex interplay and long-range effects of post-translational modifications in yeast protein interactions. - Nikolina Sostaric; Vera van Noort (PLoS Comput. Biol., 2021)

SASpector: analysis of missing genomic regions in draft genomes of prokaryotes. - Cédric Lood; Alejandro Correa Rojo; Deniz Sinar; Emma Verkinderen; Rob Lavigne; Vera van Noort (Bioinform., 2022)

DARTpaths, an in silico platform to investigate molecular mechanisms of compounds. - Diksha Bhalla; Marvin N. Steijaert; Eefje S. Poppelaars; Marc Teunis; Monique van der Voet; Marie Corradi; Elisabeth Dévière; Luke Noothout; Wilco Tomassen; Martijn Rooseboom; Richard A. Currie; Cyrille Krul; et al. (Bioinform., 2023)