GeneCards: a novel functional genomics compendium with automated data mining and query reformulation support. - Michael Rebhan; Vered Chalifa-Caspi; Jaime Prilusky; Doron Lancet (Bioinform., 1998)

GeneCards? 2002: An Evolving Human Gene Compendium. - Marilyn Safran; Irina Solomon; Orit Shmueli; Michal Lapidot; Shai Shen-Orr; Avital Adato; Uri Ben-Dor; Nir Esterman; Naomi Rosen; Inga Peter; Tsviya Olender; Vered Chalifa-Caspi; et al. (CSB, 2002)

GeneCardsTM 2002: towards a complete, object-oriented, human gene compendium. - Marilyn Safran; Irina Solomon; Orit Shmueli; Michal Lapidot; Shai Shen-Orr; Avital Adato; Uri Ben-Dor; Nir Esterman; Naomi Rosen; Inga Peter; Tsviya Olender; Vered Chalifa-Caspi; et al. (Bioinform., 2002)

The GeneCardsTM Family of Databases: GeneCards, GeneLoc, GeneNote and GeneAnnot. - Marilyn Safran; Vered Chalifa-Caspi; Orit Shmueli; Naomi Rosen; Hila Benjamin-Rodrig; Ron Ophir; Itai Yanai; Michael Shmoish; Doron Lancet (CSB, 2003)

GeneLoc: exon-based integration of human genome maps. - Naomi Rosen; Vered Chalifa-Caspi; Orit Shmueli; Avital Adato; Michal Lapidot; Julie Stampnitzky; Marilyn Safran; Doron Lancet (ISMB (Supplement of Bioinformatics), 2003)

GeneAnnot: Interfacing GeneCards with high-throughput gene expression compendia. - Vered Chalifa-Caspi; Orit Shmueli; Hila Benjamin-Rodrig; Naomi Rosen; Michael Shmoish; Itai Yanai; Ron Ophir; Pavel Kats; Marilyn Safran; Doron Lancet (Briefings Bioinform., 2003)

Human Gene-Centric Databases at the Weizmann Institute of Science: GeneCards, UDB, CroW 21 and HORDE. - Marilyn Safran; Vered Chalifa-Caspi; Orit Shmueli; Tsviya Olender; Michal Lapidot; Naomi Rosen; Michael Shmoish; Yakov Peter; Gustavo Glusman; Ester Feldmesser; Avital Adato; Inga Peter; et al. (Nucleic Acids Res., 2003)

Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification. - Itai Yanai; Hila Benjamin-Rodrig; Michael Shmoish; Vered Chalifa-Caspi; Maxim Shklar; Ron Ophir; Arren Bar-Even; Shirley Horn-Saban; Marilyn Safran; Eytan Domany; Doron Lancet; Orit Shmueli (Bioinform., 2005)

A Biclique Approach to Reference Anchored Gene Blocks and Its Applications to Pathogenicity Islands. - Arnon Benshahar; Vered Chalifa-Caspi; Danny Hermelin; Michal Ziv-Ukelson (WABI, 2016)

A Biclique Approach to Reference-Anchored Gene Blocks and Its Applications to Genomic Islands. - Arnon Benshahar; Vered Chalifa-Caspi; Danny Hermelin; Michal Ziv-Ukelson (J. Comput. Biol., 2018)

CSBFinder: discovery of colinear syntenic blocks across thousands of prokaryotic genomes. - Dina Svetlitsky; Tal Dagan; Vered Chalifa-Caspi; Michal Ziv-Ukelson (Bioinform., 2019)

Differential network analysis of multiple human tissue interactomes highlights tissue-selective processes and genetic disorder genes. - Omer Basha; Chanan M. Argov; Raviv Artzy; Yazeed Zoabi; Idan Hekselman; Liad Alfandari; Vered Chalifa-Caspi; Esti Yeger Lotem (Bioinform., 2020)