Motif Extraction and Protein Classification. - Vered Kunik; Zach Solan; Shimon Edelman; Eytan Ruppin; David Horn 001 (CSB, 2005)

Functional Representation of Enzymes by Specific Peptides. - Vered Kunik; Yasmine Meroz; Zach Solan; Ben Sandbank; Uri Weingart; Eytan Ruppin; David Horn 001 (PLoS Comput. Biol., 2007)

Paratome: an online tool for systematic identification of antigen-binding regions in antibodies based on sequence or structure. - Vered Kunik; Shaul Ashkenazi; Yanay Ofran (Nucleic Acids Res., 2012)

Structural Consensus among Antibodies Defines the Antigen Binding Site. - Vered Kunik; Bjoern Peters; Yanay Ofran (PLoS Comput. Biol., 2012)