Detecting time-evolving phenotypic topics via tensor factorization on electronic health records: Cardiovascular disease case study. - Juan Zhao 003; Yun Zhang; David J. Schlueter; Patrick Wu; Vern Eric Kerchberger; S. Trent Rosenbloom; Quinn Stanton Wells; QiPing Feng; Joshua C. Denny; Wei-Qi Wei (J. Biomed. Informatics, 2019)

PheMap: a multi-resource knowledge base for high-throughput phenotyping within electronic health records. - Neil S. Zheng; QiPing Feng; Vern Eric Kerchberger; Juan Zhao 003; Todd L. Edwards; Nancy J. Cox; C. Michael Stein; Dan M. Roden; Joshua C. Denny; Wei-Qi Wei (J. Am. Medical Informatics Assoc., 2020)

Mapping the Read2/CTV3 controlled clinical terminologies to Phecodes in UK Biobank primary care electronic health records: implementation and evaluation. - Spiros C. Denaxas; Ge Liu; QiPing Feng; Ghazaleh Fatemifar; Lisa Bastarache; Vern Eric Kerchberger; Aroon D. Hingorani; R. Tom Lumbers; Josh F. Peterson; Wei-Qi Wei; Harry Hemingway (AMIA, 2021)

ConceptWAS: A high-throughput method for early identification of COVID-19 presenting symptoms and characteristics from clinical notes. - Juan Zhao 003; Monika E. Grabowska; Vern Eric Kerchberger; Joshua C. Smith; H. Nur Eken; QiPing Feng; Josh F. Peterson; S. Trent Rosenbloom; Kevin B. Johnson; Wei-Qi Wei (J. Biomed. Informatics, 2021)

Scanning the medical phenome to identify new diagnoses after recovery from COVID-19 in a US cohort. - Vern Eric Kerchberger; Josh F. Peterson; Wei-Qi Wei (J. Am. Medical Informatics Assoc., 2023)

De-black-boxing health AI: demonstrating reproducible machine learning computable phenotypes using the N3C-RECOVER Long COVID model in the All of Us data repository. - Emily R. Pfaff; Andrew T. Girvin; Miles Crosskey; Srushti Gangireddy; Hiral Master; Wei-Qi Wei; Vern Eric Kerchberger; Mark G. Weiner; Paul A. Harris; Melissa A. Basford; Christopher Lunt; Christopher G. Chute; et al. (J. Am. Medical Informatics Assoc., 2023)

Large language models facilitate the generation of electronic health record phenotyping algorithms. - Chao Yan 004; Henry H. Ong; Monika E. Grabowska; Matthew S. Krantz; Wu-Chen Su; Alyson L. Dickson; Josh F. Peterson; QiPing Feng; Dan M. Roden; C. Michael Stein; Vern Eric Kerchberger; Bradley A. Malin; et al. (J. Am. Medical Informatics Assoc., 2024)

Beyond Phecodes: leveraging PheMAP to identify patients lacking diagnosis codes in electronic health records. - Chao Yan 004; Monika E. Grabowska; Rut Thakkar; Alyson L. Dickson; Peter J. Embí; QiPing Feng; Joshua C. Denny; Vern Eric Kerchberger; Bradley A. Malin; Wei-Qi Wei (J. Am. Medical Informatics Assoc., 2025)