Microbial community structure predicted by the stable marriage problem. - Akshit Goyal; Veronika Dubinkina; Sergei Maslov (CoRR, 2017)

Multistability and regime shifts in microbial communities explained by competition for essential nutrients. - Veronika Dubinkina; Yulia Fridman; Parth Pratim Pandey; Sergei Maslov (CoRR, 2019)

Evidence for a multi-level trophic organization of the human gut microbiome. - Tong Wang 033; Akshit Goyal; Veronika Dubinkina; Sergei Maslov (PLoS Comput. Biol., 2019)

A cross-study analysis of drug response prediction in cancer cell lines. - Fangfang Xia; Jonathan E. Allen; Prasanna Balaprakash; Thomas S. Brettin; Cristina Garcia-Cardona; Austin Clyde; Judith D. Cohn; James H. Doroshow; Xiaotian Duan; Veronika Dubinkina; Yvonne A. Evrard; Ya Ju Fan; et al. (Briefings Bioinform., 2022)

FUN-PROSE: A deep learning approach to predict condition-specific gene expression in fungi. - Ananthan Nambiar; Veronika Dubinkina; Simon Liu; Sergei Maslov (PLoS Comput. Biol., 2023)