Analysis of Snp-expression Association Matrices. - Anya Tsalenko; Roded Sharan; Vessela N. Kristensen; Hege Edvardsen; Anne-Lise Børresen-Dale; Amir Ben-Dor; Zohar Yakhini (J. Bioinform. Comput. Biol., 2006)

A supervised approach for identifying discriminating genotype patterns and its application to breast cancer data. - Nir Yosef; Zohar Yakhini; Anya Tsalenko; Vessela N. Kristensen; Anne-Lise Børresen-Dale; Eytan Ruppin; Roded Sharan (Bioinform., 2007)

Linear and non-linear dependencies between copy number aberrations and mRNA expression reveal distinct molecular pathways in Breast Cancer. - Hiroko K. Solvang; Ole Christian Lingjærde; Arnoldo Frigessi; Anne-Lise Børresen-Dale; Vessela N. Kristensen (BMC Bioinform., 2011)

Improving Breast Cancer Survival Analysis through Competition-Based Multidimensional Modeling. - Erhan Bilal; Janusz Dutkowski; Justin Guinney; In Sock Jang; Benjamin A. Logsdon; Gaurav Pandey 002; Benjamin A. Sauerwine; Yishai Shimoni; Hans Kristian Moen Vollan; Brigham H. Mecham; Oscar M. Rueda; Jorg Tost; et al. (PLoS Comput. Biol., 2013)

Gene expression analysis supports tumor threshold over 2.0 cm for T-category breast cancer. - Hiroko K. Solvang; Arnoldo Frigessi; Fateme Kaveh; Margit L. H. Riis; Torben Lüders; Ida R. K. Bukholm; Vessela N. Kristensen; Bettina K. Andreassen (EURASIP J. Bioinform. Syst. Biol., 2016)

Predicting Methylation from Sequence and Gene Expression Using Deep Learning with Attention. - Alona Levy-Jurgenson; Xavier Tekpli; Vessela N. Kristensen; Zohar Yakhini (AlCoB, 2019)

Subtype-specific transcriptional regulators in breast tumors subjected to genetic and epigenetic alterations. - Qian Zhu 005; Xavier Tekpli; Olga G. Troyanskaya; Vessela N. Kristensen (Bioinform., 2020)

miRNA normalization enables joint analysis of several datasets to increase sensitivity and to reveal novel miRNAs differentially expressed in breast cancer. - Shay Ben-Elazar; Miriam Ragle Aure; Kristin Jonsdottir; Suvi-Katri Leivonen; Vessela N. Kristensen; Emiel A. M. Janssen; Kristine Kleivi Sahlberg; Ole Christian Lingjærde; Zohar Yakhini (PLoS Comput. Biol., 2021)

Integrative pan-cancer analysis reveals a common architecture of dysregulated transcriptional networks characterized by loss of enhancer methylation. - Jørgen Ankill; Zhi Zhao; Xavier Tekpli; Elin H. Kure; Vessela N. Kristensen; Anthony Mathelier; Thomas Fleischer (PLoS Comput. Biol., 2024)