Barnacle: An Assembly Algorithm for Clone-based Sequences of Whole Genomes - Vicky Choi; Martin Farach-Colton (CoRR, 2003)

A Combinatorial Shape Matching Algorithm for Rigid Protein Docking. - Vicky Choi; Navin Goyal (CPM, 2004)

Local Search Heuristic for Rigid Protein Docking. - Vicky Choi; Pankaj K. Agarwal; Herbert Edelsbrunner; Johannes Rudolph (WABI, 2004)

An Efficient Approximation Algorithm for Point Pattern Matching Under Noise. - Vicky Choi; Navin Goyal (LATIN, 2006)

Faster Algorithms for Constructing a Concept (Galois) Lattice - Vicky Choi (CoRR, 2006)

On Updating Torsion Angles of Molecular Conformations. - Vicky Choi (J. Chem. Inf. Model., 2006)

Algorithms for the Extraction of Synteny Blocks from Comparative Maps. - Vicky Choi; Chunfang Zheng; Qian Zhu 002; David Sankoff (WABI, 2007)

An Algorithmic Approach to the Identification of Rigid Domains in Proteins. - Vicky Choi; Navin Goyal (Algorithmica, 2007)

Minor-embedding in adiabatic quantum computation: I. The parameter setting problem. - Vicky Choi (Quantum Inf. Process., 2008)

Issues in the Reconstruction of Gene Order Evolution. - David Sankoff; Chunfang Zheng; Adriana Muñoz; Zhenyu Yang; Zaky Adam; Robert Warren; Vicky Choi; Qian Zhu 002 (J. Comput. Sci. Technol., 2009)

Generalized Gene Adjacencies, Graph Bandwidth, and Clusters in Yeast Evolution. - Qian Zhu 002; Zaky Adam; Vicky Choi; David Sankoff (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

Adiabatic Quantum Algorithms for the NP-Complete Maximum-Weight Independent Set, Exact Cover and 3SAT Problems - Vicky Choi (CoRR, 2010)

Different Adiabatic Quantum Optimization Algorithms for the NP-Complete Exact Cover and 3SAT Problems - Vicky Choi (CoRR, 2010)

Different adiabatic quantum optimization algorithms. - Vicky Choi (Quantum Inf. Comput., 2011)

Minor-embedding in adiabatic quantum computation: II. Minor-universal graph design. - Vicky Choi (Quantum Inf. Process., 2011)

The effects of the problem Hamiltonian parameters on the minimum spectral gap in adiabatic quantum optimization. - Vicky Choi (Quantum Inf. Process., 2020)

Essentiality of the Non-stoquastic Hamiltonians and Driver Graph Design in Quantum Optimization Annealing. - Vicky Choi (CoRR, 2021)